barSeed - Barley Seed Development Database

Probe CUST_9588_PI390587928

Source Contig U35_13882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9588_PI390587928	Hv_44K_v2	CCTCAGTTGCAATGGGAGGTGATGAATATGAATGCAATGCGATTGTTGGTTCTCAAAAAA	577	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8461.1	499	3e-21	286 - 339	100	54 / 54	plus	ABC00434 ABC00499 ABC29891
JLOC1	JLOC1_5617.1	499	2e-21	286 - 339	100	54 / 54	plus
Harvest21	ABC00182	642	3e-25	572 - 631	100	60 / 60	plus
Harvest21	ABC00977	650	6e-22	578 - 631	100	54 / 54	plus
Harvest35	U35_13882	649	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_13882 649 Hv_44K_v2
GCACGAGGCTCCATTTCCATCTCAGTCAGCTCCAAGGGAGGAAGGAAGCCGTCAACCATG
TCCGGTCGCGGCAAGGGAGGGAAGGGCCTCGGCAAGGGCGGCGCCAAGCGTCACCGGAAG
GTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGTCTGGCCCGGCGT
GGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTTAAGATC
TTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACC
GTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGACAGGGACGCACCCTCTACGGATTC
GGCGGCTGACCTGCGCCCGCTGCTCCAGTCTCCATCGAGTAGGCTCTGCTAGCTGCTGCG
GCTGTTTCTGGTGCTGTGGTTTCGTTTCTGAATTCTGAGTGTGTGCGTGCGTTGTTGTTC
CATCTGTCCGTGTAGTTAGTGGAAGGCGATGGATCTGAATGCAGTCAGTTGGTCAGAGTG
CGTGTGTTGGTTGTCCTGCCGGTCTCTGTAGCCAGTTCCTCAGTTGCAATGGGAGGTGAT
GAATATGAATGCAATGCGATTGTTGGTTCTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None