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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_9424_PI390587928Hv_44K_v2CTTTTGGAATCACGCTAAGACTTGTTATGAAGAAATGGATGTCACCGTTTTGAACTAAAA1016GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9991.8191.2150.7900.3830.461
Raw 4877.6436919.0674030.3204153.357707.605923.196



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_46786.122024e-231985 - 204110057 / 57plus
Harvest21ABC113449963e-25924 - 98310060 / 60plusABC11344
Harvest35U35_1976010893e-251017 - 107610060 / 60plus



Contig Sequence (1089 bp)

>U35_19760 1089 Hv_44K_v2
GGAACAACAGAAGTGAGAACCAGGCACAGGCTGATGTTATGAATTCAGCTAGCAAGGAGC
AGACATCTCCAAAAGCACGTACTTATGGCAATGGTTTGATTGTTCAGACGGTGGCGTTGG
GTAAACCAGATGGTAAAAAAGCTACCCCTGGGAGAAAGGTAAACATTTTTTAGGCTGCAC
CAGCAGAAGAACTCCATTCAGGCTACCATTTATTAATGCAATTTCTACTTTCAATTGCTC
AATGAGAACAGTATGTACTTGCCTTTGCGTTGTTCTAATTAAATTGATCACTTAAAGATT
TTTGTATGCTTGTTTATGTATATATTTAATTATTATTACTAACATGTGAATTCTTTTCTA
GGTTTTTGTCACGTACACTGGCAAGTTGAAGAATGGCAAGATTTTTGACTCTAATGTTGG
TCGGAAGCCTTTTCAGTTTAGGCTAGGTGTTGGAGAGGTCATTAAAGGCTGGGACATTGG
TGTCAACGGTATTTAAATTCTCAAATTTCGATCAAACACATAGTTGTGGCTAGTGCATAT
GTTGTACTACTACATATCTGATACATGCGGCTAGATAATACTCCATCTTATGATCCTGTC
TTGTGTGCTTGTTATAGGTATGCGTGTTGGGGACAAAAGAAAGCTTACCATTCCACCTTC
TATGGGCTATGGAAACCAGAAGGCCGGAACGATACCGCCGAACTCAACTCTTCTGTTTGA
TGTGGAGCTAATGAACGTACAGTGAAGAGATGGTCCAAAAGGGATGAGTACAGTGAAGAG
ATGGTCCAAAAGGGATGAGTACAAACCGAGACGGTTGTGCAAGTTCAAGAAAACATCATT
TTCCTCCGTTCTCGCCATAGCTTCAGTCAACATCCTACAGTCGTCTTTATGTACCTTGTT
TTTTCATCAGTTCTTCATGTTAATTAAGCCATCTGGGCTAGTTTTGGAAGCGTAACATTG
GCCTGGGTTGCAACTGAGCTTACTACTGTGATGATTTTGTGACTCGTTTTGACAATCTTT
TGGAATCACGCTAAGACTTGTTATGAAGAAATGGATGTCACCGTTTTGAACTAAAAAAAA
AAAAAAAAA



Homology of Contig U35_19760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None