barSeed - Barley Seed Development Database

Probe CUST_9405_PI390587928

Source Contig U35_20637

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9405_PI390587928	Hv_44K_v2	CCTGGAAAAGCAACAATTGAAGTACAAAATATTGATGAGTTCACATGGTTAAATGACAGC	1194	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364917	3308	2e-24	1180 - 1239	100	60 / 60	plus	ABC03880 ABC03882 ABC03883 ABC09378 ABC12834 ABC13308
MLOC	MLOC_17998.2	1994	2e-24	982 - 1041	100	60 / 60	minus	ABC12834
MLOC	MLOC_17998.1	2142	2e-24	1114 - 1173	100	60 / 60	minus	ABC12834
JLOC1	JLOC1_12440.1	2195	8e-25	908 - 967	100	60 / 60	plus
Harvest35	U35_20637	1256	3e-25	1195 - 1254	100	60 / 60	plus

Contig Sequence (1256 bp)

>U35_20637 1256 Hv_44K_v2
ACGAACGGAAGAGGGGAAAACCAAAACTCTGGCGCGATGGCGAGGACGGGGCGGTCCGTG
CTGCTGCTCCTCCTCCTCCTGATCCCCACGGCGCTCTCCCTGCTACTGCTCTACGAGCGC
CGCCTCGCCGTCGCGCTTAACCCCATCCAGAGGAAGGATTTTCCGGCCGGGATTGCGAGT
CAGGGCCGTAGCGTCGAGGATAGCAAGCTAACTGCGTTTCCTCTGGAAACTGCGAGTTCT
TTGAAGGAACCTGTCGGTGCCGTATTATTGGATTTGGAGGAACCGCTCAAGTTTGCCAAA
CATTCGATTGAGCCCACGGACCAAGAATTGCTACCCGGGAAGAAGGCTAACAGGGTACTT
TCTGAGATCACTTCTGGTGATGGTGCCGTATTGAAGGGTGGAGAACTGATCGACCAAGTG
ACAGGGCGGAAGGCACAGGATGGTGGTTTGGCGACGGGCTCAATGGATCAGCAGGAGAAG
CACACAGAATCCCAGCAGCAGTCTTCTTCTGAGGGAAGATCCTTGGAGGGAGGAAAGAAC
CCTCAAAAAGAAAACACAGATGGTAGGAGTAGAAATATGCCTTTGTCTGATACCAGGGTC
CGGGATATCAGGGATCAGTTAATCAAGGCAAAGGTCTACCTTGGTCTTGGAGCCATTCGA
GCAAATCCTCAATACCTCAGGGATTTGCGACAGCGGATACGGGAAGTTCAAAAGGTGCTT
GGTGATGCATCCAAGGACTCTGATCTACCAAAGAATGCCAATGAGAAGGTGAAAGCACTT
GAGCAGACATTGGTCAAGGGCAAACAGACACAGGATGATTGCTCTGTTGCTGTCAAAAAG
CTCCGGGCTATGCTTCACTCAGCAGAGGAGCAGCTGCATGCACAAAAGAAGCAAACTGTT
TTTCTAACACAACTTGCAGCCAAAACCCTTCCCAAAGGTCTTCACTGCCTCCCCTTGAGG
CTAGCTAATGAATACTTTTCATTGGATCCTAGTCAGCAGCAATTCCCAAACCATGAGAAA
CTTGATGATCCCAAACTGTATCACTATGCCTTATTCTCAGATAATATATTGGCAACAGCA
GTTGTTGTTAATTCGACAGTGTTAAATGCCAAGCATCCTTCCCATCATGTTTTCCACATA
GTAACTGACAGACTAAATTACGCTCCAATGAGAATGTGGGTCCTCTCTAATCCTCCTGGA
AAAGCAACAATTGAAGTACAAAATATTGATGAGTTCACATGGTTAAATGACAGCTC

Homology of Contig U35_20637 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23780.1	644	2e-169	protein\|glycosyl transferase 8 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g20550.1	661	0.0
Arabidopsis v10	AT5G47780.1	616	1e-110	\| Symbols: GAUT4 \| galacturonosyltransferase 4 \| chr5:19347991-19350517 FORWARD LENGTH=616