barSeed - Barley Seed Development Database

Probe CUST_9401_PI390587928

Source Contig U35_18321

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9401_PI390587928	Hv_44K_v2	CCTGATGTAGTACCGTCGTGTTGTGATGCACAAAAGACATACTAGTATTGGAGCAAAAAA	1162	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5068.1	3105	2e-24	937 - 996	100	60 / 60	minus	ABC12939 ABC23264
MLOC	MLOC_5068.2	1405	2e-24	11 - 70	100	60 / 60	minus	ABC12939
JLOC1	JLOC1_3226.1	1708	8e-25	1492 - 1551	100	60 / 60	plus
Harvest21	ABC12939	1233	3e-25	1163 - 1222	100	60 / 60	plus	ABC12939
Harvest35	U35_18321	1233	3e-25	1163 - 1222	100	60 / 60	plus

Contig Sequence (1233 bp)

>U35_18321 1233 Hv_44K_v2
CTCTTCTCCACTTAACACCAGCGCTCCACTCCTGCACAGTCCTCTGCACCAGCCAGCGCA
CGGCGAGCGCGCCGGCATTGGCGCCGTAAGATGGCGAGCGGCTCCGGGGAGCACTTCCTG
AGGCAGCTGAGCTCCAGCAACGGGCTGCAGGCCCCGCAGGACGGGTACGGCGGCGGCGGC
GGCGGCGGGCGGAGGAGGGGCTCGAGGCGGTGGTCCAAGAAGCGGGCCGGGAGAGGGTAC
GGCGGCGGCGGCAAGGGTGAGGCGTCGGCGTCGTCGGCGTCGGCCGGGAGGAAGCGGGTG
ATGGTGGTGGTGGACGACAGCTCCGGCGCCAAGCACGCCATGATGTGGGCGCTCACCCAC
GTCGCCAACAGGGGTGACTTCCTCACCCTGCTCCACGTCCTGCCGCACTTCGGCGCCGGA
GGCGAGGAGGCGCCCTCCCTCGCCAACTCCCTCGGCACGCTCTGCAAGGCCTGCAGGCCC
GAGGTGGAGGTGGAGGCGCTGGTGATCCAAGGCCCCAAGCTGGGCACCATCCTCAGCCAG
GTGAAGAAGCTGGAGGCCTCCGTGCTGGTGCTCAGCCAAACCAAGCCCTCTACCTTCTGC
TGGCTAAGCTGCTTGGCGCCGAGCAGAGGGGAGGAGGAGGTGGTGGAGCAGTGCATCAAC
CAGGCCGAGTGCCTGACGCTGGCGGTGAGGAAGCAGAGCAAGGGCGTCGGCGGATACCTC
GTCAGCACCCGGTGGCAGAAGAACTTCTGGCTCCTCGCTTGACCGTCCGTCGTCCCGTCC
GCCATGTCCACGACCGTGTTTCTATAAAAGCTCGCTGCTGAGTTTGTCTGTCTAGCTCCT
GCGTGATCTGAGTATTTTACACCAGCGTATCTGTCATTCTATGTGTTTTTTAACCCGTCC
ATCGAGTATAAAAAATAAAAAAAGATGTCCGTGCGTGCGTGCGTGCGTGCGGCCATGTCG
TTCGTGTGTCGCTGCGGTGGATCGTGCTGCTCCTGCTGCCCCCATCGTGTTGTAAAATGT
AAAGCCCCACAGAGTCCTAGGATTTGACCCTCCTATAGCCTTAGCCTTGCCGTCTTTTCA
GTGCGTGTAATTTGTGCCCCTTCTCTTTTTTATCTTTTCTGCTGCTAGACTTTCTCTTTC
TGCTGCAAGATTGTAATATGTACCTGATGTAGTACCGTCGTGTTGTGATGCACAAAAGAC
ATACTAGTATTGGAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18321 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65440.1	242	2e-88	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g56580.1	228	7e-86
Arabidopsis v10	AT1G44760.1	213	2e-63	Adenine nucleotide alpha hydrolases-like superfamily protein \| chr1:16896894-16898427 REVERSE LENGTH=213