barSeed - Barley Seed Development Database

Probe CUST_9393_PI390587928

Source Contig U35_18329

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9393_PI390587928	Hv_44K_v2	GTCACCGCAGTAAAGAGAGACAAGGCTATCGGATGATGAAGAATGAAGAGATTTCCATGT	176	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365804	1121	2e-24	876 - 935	100	60 / 60	plus	ABC10131
Harvest21	ABC10132	641	3e-25	239 - 298	100	60 / 60	minus
Harvest35	U35_18329	474	3e-25	177 - 236	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_18329 474 Hv_44K_v2
CGAAATTATATCACATGGAGATTGCTCTAGGTCACTATAAGAATTGGTCTGTCCCAGATG
CACTTGCACATGTGAAAACATACATGAAGACTATTTTCTCAATGGATTCATTTGTCAATA
CTCGGGGCCTGCCAGAGGATGTTATTGCTGGATGGCGCTCAAAAGTCATGGGTTAAGTCA
CCGCAGTAAAGAGAGACAAGGCTATCGGATGATGAAGAATGAAGAGATTTCCATGTTCAT
GTGTATAAGCTGCAGACATTTACTGAAGAATTTCAGTGTAAAACTTTGAAGGTAATTCTG
TCAGATCTTTTTCTTTTGCTTTCAGTATCAAATGGAAAGTGTCAATATAAATGGTATGGA
CTTGTAATTTGTCATGGAACCTCGTTTTGTTAAATTTATAAATAAAGAGTCATGGTTGTC
TCAATTGTTGCATTGTTTATTTAAAACGTTACTCGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18329 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None