barSeed - Barley Seed Development Database

Probe CUST_9390_PI390587928

Source Contig U35_20642

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9390_PI390587928	Hv_44K_v2	ACTGATGATGAAGTACAGGATGAGGAAGATGATGATGAGAGTGCGGACGAATACACAGAT	1293	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.287	1.258	1.374	0.783	0.775	0.593
Raw	206.514	273.750	298.645	230.459	90.906	77.907

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67779.2	4330	2e-24	2915 - 2974	100	60 / 60	minus	ABC04921 ABC04922 ABC04923
MLOC	MLOC_67779.3	4292	2e-24	2898 - 2957	100	60 / 60	minus	ABC04921 ABC04922 ABC04923
MLOC	MLOC_67779.1	4540	2e-24	3076 - 3135	100	60 / 60	minus	ABC04921 ABC04922 ABC04923
MLOC	AK362832	4121	3e-21	1152 - 1211	97	58 / 60	plus	ABC04921 ABC04922 ABC04923 ABC22503
MLOC	MLOC_45769.1	488	3e-21	106 - 165	97	58 / 60	minus	None
JLOC1	JLOC1_44787.1	4462	8e-25	1358 - 1417	100	60 / 60	plus
JLOC1	JLOC1_29687.1	541	2e-21	244 - 303	97	58 / 60	plus
Harvest35	U35_20642	1419	3e-25	1294 - 1353	100	60 / 60	plus

Contig Sequence (1419 bp)

>U35_20642 1419 Hv_44K_v2
GTGCTCACCTCCGGCGCGGTGCTCTGCTCCGCTCCGCTCCCTGTTCCCGGCATCGGCGAT
CGGCAGGCGACGCGCAGGCTCGTTCTGCGGCGGCGTCGTGCCTCGTGCGGCGCAGCAGGG
CGTCGTGCAGCATTGGGACTCCTTCCCACCGCAGCCGTCCTCGCCGACGACAAATCCCCA
TCCCCTCCCCTCCCCTCCCGCCTCCGCTCCACTCATCCAACCCCCCTCCAAAGCGAGCCT
CCGACAAGTTTCCGATCGAATCGAAGCCAAGCAAGCTTCCCTCCTCCTCCTCGAGGATAC
TGTTGAATACCTTTGTGAAGAGGACTTGAACACAGGTTTGTCGCGATGGCGAATACAGAC
ATAACCGGCATCTTGGAGAAGATGACAGGGAAAGATAAAGACTACAGATATATGGCTACA
TCAGATCTGCTTAGTGAGTTGAACAAAGAGAGTTTCAAAGCAGATCAAGACCTTGAATCA
AAGTTGACTAATATCGTTCTTCAACAACTGGAAGATGCTTCAGGAGATGTTTCTGGTTTA
GCTGTGAAATGCTTGGCTCCACTTGTTAAGAAGGTTAGCGAGGAAAGAGTAGTGGAGATG
ACCGACAAGCTTTGTGATAAATTACTCAATGGAAAGGACCAACATCGTGATACTGCTAGT
ATAGCTCTGAAGGCAGTCATTGTGGAAGTTACTACTGCGTCACTTTCTGAAAAGATTTTA
GTTTCTCTTGCCCCGCAGCTAATCAAAGGTGTCACCAGTGGAAAGAGTGCTGAAATTAAA
TGTGAATGTCTTGATATATTAGGTGATGTGCTTCATAGATTCGGCAACGTGATCACAAAA
GATCACGCGTATATGCTCACTGCACTTTTAGCCCAGCTGAGTTCCACTCAAGCAAGTGTG
AGAAAAAAGTCTGTTTCTTGCATTGCATCGCTCGCTCCATGTTTGTCAGATGATCTATTA
GCCAAGGGGACTTTGGAGGTTGTCAAATTGCTGAAAAACAGAAAGGCGAAGTCTGACATA
ACACGAACAAATATCCAGATGATTGGTGCTCTAAGTCGCTCAGTTGGATACCGGTTTGGA
CCACACCTTGCCGAAGCTGTTCCTTTGCTCATAAACTATTGTACAAGTGCATCAGAAAAT
GATGAAGAGCTCCGTGAGTAGAGCTTGCAGGCCCTCGAGAGTTTTATGCTCAGATGTCCA
AGAGATATATCCCCATATTGTGAGGGTATTCTGAATCTTGCTTTGGAATATGTAAGCTAT
GATCCTAATTTCACCGATAGCATGGATGAGGATACTGATGATGAAGTACAGGATGAGGAA
GATGATGATGAGAGTGCGGACGAATACACAGATGACGAGGATGCAAGCTGGAAGGGTCGC
CGGGCATCAGCGAAGTGCATATCTGCAATTATAGTATCT

Homology of Contig U35_20642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07120.1	1219	0.0	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g17710.1	1220	0.0
Arabidopsis v10	AT2G02560.1	1219	2e-146	\| Symbols: CAND1, ATCAND1, ETA2, TIP120, HVE \| cullin-associated and neddylation dissociated \| chr2:690345-697342 FORWARD LENGTH=1219