- Probe CUST_9359_PI390587928
- Source Contig U35_20656
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9359_PI390587928 | Hv_44K_v2 | CGTCAATTTGGTATCATTGGCTGTAATTGACTTGAGTTTCTTAGCTTTCGTAAAATTCAG | 589 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.217 | 1.185 | 1.199 | 0.962 | 0.338 | 0.353 |
| Raw | 4529.363 | 6922.360 | 6137.350 | 7648.130 | 962.704 | 1088.683 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11260.7 | 3275 | 2e-24 | 3172 - 3231 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.16 | 1236 | 2e-24 | 1134 - 1193 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.4 | 3418 | 2e-24 | 3316 - 3375 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.14 | 2302 | 2e-24 | 2189 - 2248 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.15 | 2111 | 2e-24 | 1998 - 2057 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.8 | 3243 | 2e-24 | 3140 - 3199 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.9 | 2805 | 2e-24 | 2698 - 2757 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.10 | 2928 | 2e-24 | 2821 - 2880 | 100 | 60 / 60 | plus | ABC13533 |
| MLOC | MLOC_11260.11 | 2960 | 2e-24 | 2853 - 2912 | 100 | 60 / 60 | plus | ABC13533 |
| JLOC1 | JLOC1_7442.6 | 2300 | 8e-25 | 2153 - 2212 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.5 | 2176 | 8e-25 | 2029 - 2088 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.4 | 2410 | 8e-25 | 2263 - 2322 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.3 | 2455 | 8e-25 | 2308 - 2367 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.2 | 2423 | 8e-25 | 2276 - 2335 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7442.1 | 2209 | 8e-25 | 2062 - 2121 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC13533 | 712 | 3e-25 | 64 - 123 | 100 | 60 / 60 | minus | ABC13533 |
| Harvest35 | U35_20656 | 712 | 3e-25 | 590 - 649 | 100 | 60 / 60 | plus |
Contig Sequence (712 bp)
>U35_20656 712 Hv_44K_v2 ATCAGATCCCTGCTTGTTACTCTGCTGAGCAACCTCCACCACTGCAGCCATTCAATTTTC CAAAGTTTCACCCCTTGACACTATTCTACATCTTCTACAGTATGCCCAAGGATGTTGCTC AGTTATATGCCGCGAATGAACTGTATAACAAAGGGTGGTTTTACCACAGAGAGTATCGTG TTTGGCTCACACGAGCTTCAAATGTGGCACCTCTTGTGAAAACTCCACTGTATGAACGAG GATCCTACATTTGCTTTGATCCCAACCTGTGGGATACAATTCAGAAGGACAACTTTGTTC TCCAATATGAATCTGTAGAGAAGAGACCTGTCCTCCCTTCCGCCAGCCAAAATGTTAGAT TATAAGCTGTTGTACTTCTGTATTAGAGAATGTCGATTTTCTTCATCCGGATCAGTACCT GTTATTATCATAGGATATAGGTGGCGTACATTTGTGCAAAATGATTCTGACTTGTGTGCT GTTCCGAAGAAGGAGCTTCTCTGTGTTGGCTGGCAGACCTGATGGTAGTAGCTTTAGACA TGTAGCCGAGGAAAACACGCCTCGTAATTCGTTGGCTGTAAACCTTTAGCGTCAATTTGG TATCATTGGCTGTAATTGACTTGAGTTTCTTAGCTTTCGTAAAATTCAGACATGTACTCT TTAACTATGAGTTTAATTATCGGTATTTTGGGTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_20656 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g54120.4 | 623 | 1e-53 | protein|CCR4-NOT transcription factor, putative, expressed |
| Brachypodium v1_2 | Bradi2g21970.3 | 572 | 1e-67 | |
| Arabidopsis v10 | None |