barSeed - Barley Seed Development Database

Probe CUST_9326_PI390587928

Source Contig U35_32646

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9326_PI390587928	Hv_44K_v2	CATGGAGCATGACAAAGACGTTGGAGCAGTTGTAGTGGGATTTGATCGCTATTTTAACTA	604	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59521.3	778	7e-23	529 - 588	98	59 / 60	minus	ABC00588 ABC00951
MLOC	MLOC_59521.1	1437	7e-23	578 - 637	98	59 / 60	minus	ABC00588 ABC00951
MLOC	MLOC_59521.2	1509	7e-23	531 - 590	98	59 / 60	minus	ABC00588 ABC00951
JLOC1	JLOC1_38738.2	1658	4e-23	884 - 943	98	59 / 60	plus
JLOC1	JLOC1_38738.1	1799	4e-23	792 - 851	98	59 / 60	plus
Harvest21	ABC00588	1339	1e-23	674 - 733	98	59 / 60	plus	ABC00588
Harvest35	U35_32646	664	3e-25	605 - 664	100	60 / 60	plus
Harvest35	U35_233	1362	1e-23	676 - 735	98	59 / 60	plus

Contig Sequence (664 bp)

>U35_32646 664 Hv_44K_v2
ATATCGGCGCGTATGTGGTTCTTCTCACGCAGATAACCTCCTACGAAACGCGAGAAGAAC
ACCATGGGAGGATCGACAAGTCGACATGATCCAGGACTGTACAGAACTGAGGCTGAGTGA
ATCGCAGGAACTCTCCTCCCTTTCATCCATGAATGGTGATGCATGACTGTATGGTGATTT
TCAGTTTCAGACTTATTTTGTACCTAACCTTGCAGTGTAAAGACTAAAGAGAGGTGCTGC
CTGCTAGGGCAGTGGTCCCCGTTTGCTCCCAATTGGAAGTGGAATAAAAGATGCAATGCC
TAGTTAAAACTGTTGCATGTTATGCTGTTAGTCTACTTCTGTTCTGTAGCGGCCGCTCCA
CCAAGTCGAGGAAGCAGTACGGGAAGAAATTCGAGACGCTCGGGCTCAGTGTCAACGAGG
AAGAGATATTTGCTTCGTCCTTCGCAGCTGCCGCATACCTGGAGTCTATCGATTTCCCCA
AAGACAAGAAGGTTTACGTGATTGGAGAGGAAGGGATCCTCAAGGAGCTCGAGCTGGCTG
GCTTTCAGTACCTCGGCGGACCCACAGACGGTGACAAGAAGATAGAGCTGAAGCCTGGCT
TCTACATGGAGCATGACAAAGACGTTGGAGCAGTTGTAGTGGGATTTGATCGCTATTTTA
ACTA

Homology of Contig U35_32646 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None