barSeed - Barley Seed Development Database

Probe CUST_9219_PI390587928

Source Contig U35_44098

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9219_PI390587928	Hv_44K_v2	AAATCTCAAAAGCCTTCCAAATGAGATTGTTTCCCAGGTTGAGCCCTGGGAATCATGGTA	564	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.226	0.857	1.937	1.508	0.815	0.688
Raw	19.637	20.407	42.750	49.914	9.985	8.703

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78764.1	7911	2e-24	1475 - 1534	100	60 / 60	minus	ABC17101
JLOC1	JLOC1_52490.2	7869	8e-25	6378 - 6437	100	60 / 60	plus
JLOC1	JLOC1_52490.1	7859	8e-25	6368 - 6427	100	60 / 60	plus
Harvest21	ABC41572	636	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_44098	636	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_44098 636 Hv_44K_v2
TGACGACATACCAAGGCAGTCAATTGATGCTAGCTCATATGAAAGGACAGGCTACCTGGA
TTCAAATCGGTTAACTCACTGCATGAGTGCGTTCAGACAGCTGTTAATAAATGATGAGAT
AACAGTGCATCAAGGTTGGGATGCCGTCTCCATGTTTGTACGAGTTGGCTTTAACAGTGA
GATGATAACGGACACATCACACTTTTGCCGAGCTATGATTCTTTCTGGATGTGCTTTCAA
AACTGTAGTTGAAGTGTACCATGGAGGACAGGAAAATCTGGAAAGTGTGAATGCAGACTC
GAGGAATCCTTTGGACCTCTTAGAGCTTTATGGTGCTTCGACAGATGACTGTTTGTCCGA
TCTGGTCTCAGGCTCTTGTGAGTCTCAGGCATTGCTTCATAAACTACTGTCTTCATTGAG
CCAGTCAATAGGGGAACACGCCGGTTCTCTTGAAATGATCCGATCTGGTGTCTGGGGAAA
GTTGATAACCTTTTCTGAGAACATGCAGCTAGGTAGCCAACTACGTGTATATGCCCTGCA
ACTGATGCAGTGTATTACAGGAAGAAATCTCAAAAGCCTTCCAAATGAGATTGTTTCCCA
GGTTGAGCCCTGGGAATCATGGTATGAGCCTGGAAC

Homology of Contig U35_44098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g13150.1	2454	8e-90	protein\|expressed protein
Brachypodium v1_2	Bradi4g33310.1	2477	2e-100
Arabidopsis v10	None