barSeed - Barley Seed Development Database

Probe CUST_9174_PI390587928

Source Contig U35_3001

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9174_PI390587928	Hv_44K_v2	CTGTATCATTGGCTCCCGGATCTTCAAATCGCAGGCCTTGCAGTAGTATCTAGTATTACT	1401	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360340	1982	2e-24	1849 - 1908	100	60 / 60	plus	ABC07013 ABC21120
JLOC1	JLOC1_24469.1	1416	8e-25	1241 - 1300	100	60 / 60	plus
Harvest21	ABC07013	1465	3e-25	5 - 64	100	60 / 60	minus	ABC07013
Harvest35	U35_3001	1465	3e-25	1402 - 1461	100	60 / 60	plus

Contig Sequence (1465 bp)

>U35_3001 1465 Hv_44K_v2
CGGCACGGGTCAATCTGAGCAATGACGTTTACGATTCAGATACCGGTGCTGATAAGAACA
AGAAAGAATCTGTCGTCAACATTGTTGGCAGTCGAGCAGTGACACAGTATGCAGCGAACC
TTTCTCTTCTGCTCGGGTTTGGAGGGCTATTTTGGGCCTTTGCTGAAGCAGGGGACGTCA
GGTTCATCGTGTTGGTGCTATGTGCAATCCTCTGCGGCTATGTTTATCAGTGCCCGCCGT
TCCGATTGAGTTATCGTGGCCTAGGCGAACCATTGTGTTTTGCTGCATTTGGCCCATTGG
CTACATCAGCTTTCTACTTCTCAAACAGCAGCAGAAGCATTTCAAGCGGGACTGCGCTTC
TCCCTATCACCAAAACAGTCATAGCTTCATCGATTCTTGTCGGGTTGACAACCACACTGA
TACTCTTCTGCAGCCACTTTCACCAGATCGACGGAGACAGGGCTGTCGGAAAGATGTCTC
CCCTGGTAAGAATCGGCACCAAAACAGGCTCGACAGTAGTAACGCTTGCGATCGGCGCCC
TCTACGCTCTCTTGGCGGCTTTCGGCATAAGCAGATGCCTCCCGCCATCCTGCATTGTCC
TTGGCGCCCTGACTCTCCCTCTGGGCAAATGGGTCGTGGACTACGTGCAGAGAAACCATG
ATGATGACGCCAAGATCTTCATGGCCAAGTATTACTGCGTGCGGCTGCACGCCGTGCTCG
GGATGGCGCTGGCTTCCGGCCTGGCGCTGGCCAGGAACGGCATGCTTGCCTGACAGACAG
ACATACACACGGGCCACCATTGACAGTCTTGACACTCTGGAGGCAACAGATATCAGAGAA
ACGCTTCCTTCTTATTGCAGTTTAACAAATGGAATAAAGAAAACACAGACAGACACAGAC
ACAGACACATCTTTCACAGCTACTCTACTCCAGTAGAAATTCAATGGCAGTTGTCTAGCC
GGAGGCGTCCGGATTGGGCAAGCAGAGGTTCAGAGGCAGGCTCACAGCAGCAGGCTCTAG
CTTGTACGTACATACCACCAGTACAGTATCCCGTGATCATCTAGGTAGACTCTTTTCTCC
ATGCAAAGGGAGAGGTAGCTTGGCGTGCGCGTCCGTCCTCGCAGCTACTGCTAGGGTAGA
TCGCCGTTTGCTTGGCCTCCAGCAGCATATGAATTGAATTGAATTCTGATGAGGCAGGAC
GGGACAAGTCAGTCACAACATGCTCCGGCCCTCTCCTCTCCTCTACCGACGGACGGACTG
CCATTACTACATTATTATTACTTCCCCTCTTTACCAACCGGCGGTGGCAGAGAGTGGTGG
TAGCCCAGCTGCTCCTGGTACGGCGCGCAGGCCAACTTGTGTGCTGCCTTTCCCACCTTG
CCATCTACTCCTATGTTTGTACTGTATCATTGGCTCCCGGATCTTCAAATCGCAGGCCTT
GCAGTAGTATCTAGTATTACTGCTA

Homology of Contig U35_3001 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g09060.1	370	2e-105	protein\|prenyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g71860.2	276	3e-111
Arabidopsis v10	AT1G60600.2	382	6e-74	\| Symbols: ABC4 \| UbiA prenyltransferase family protein \| chr1:22324807-22326759 REVERSE LENGTH=382