barSeed - Barley Seed Development Database

Probe ABC21120

Source Contig ABC21120

barSeed

Links

Affymetrix Source Sequence (1606 bp)

>ABC21120 1606
ATGCCGCTCGCCGGCATTGCCCTCGCGCCTCTCCTCGTATCCCCTCTCTCGCCTCCCTCT
CCCTATGCCCGTGGCAGCGTTGCAGTCTCCGCAGAGCCCCGGGGAAGGCGTCGCGCGCTA
CGGCGGGTGCGGTGCTCGGCCGCAGCGGCGTCCGGCGGAGGCAGTGACGCCGGCGAGCTG
TCACACGCCACGCTGCTCTGGAGGGCCGCCAAGCTGTCCATCTACTCCGTGGCACTCGTG
CCGCTCACCGTAGGGGCCGCTGCTGCTTACAACCACGCGGGGCTGTTCTTCGCCAGGCGC
TACTTCGGCCTCTTGGCAGCTGCTTCCCTCGTGATCACCTGGCTCAATCTGAGCAATGAC
GTTTACGATTCAGATACCGGTGCTGATAAGAACAACAAAGAATCTGTCGTCAACATTGTT
GGCAGCGAGGGCGGAGGAGGAGGATCTTTGGAGGACATGGAACTCGCGCTCGACGGCGTG
GGCGGACTGGAGGATGGCGCCGGCGGGCTTCTTCTGCAGCACGTACCGCCGGGGCTCCCC
GCCGGGCGCGGAGGCCTCGAGGCAGTAGGTGGGGTTGGACTGGTCGTGGCCGAACTTCGT
GAGGGCGAGCGACGGGGCCCACGCGGGGAAGCCCGGGACGTGCGCGGCTACGTACCGCAG
CAGCGCCGCCTTGTCCAGCGCCTACGCCTCGTGCACCGGCCGCAGCAGGTCCGAGGGGAC
GACGACTGTGGAACAGTCCGGGATTGGATTGCTGATTGCGTGGCTGTTGGAAAGTGGCTA
AACCGGAGGCATGCTCTCCAACTGAGGGCACAACAGGGGATTCCGGTCTCTGAATACGGG
GTTTTGGTTGACATGATTGGTGTGCCTGACTGGGCTTTCGAAGCGGTCGGCTTGGAACTG
AGAGGAATGGGCCAAGACACTGCATATCATCCTGGCCTTTACCTGACAACAGCCCAGAGG
GAAGCAGTGGAGGCTCTGATCCAGGAGCTCCCCAAGTTCATGCTGAAAGCGGTGCCGACG
GACTGCAGCGAGTGCCCGATCTGCCTGGAAGAGTTCAAGGTGGGGAACGAGGTGCGTGGC
CTCCCGTGCGCGCACAACTTCCACGTGGAGTGCATCGACCAGTGGCTGCGGCTGAACGTC
AAGTGCCCGCGGTGCCGCTGCTCAGTGTTCCCCAACCTGGACCTGAGCGCGCTCAACGGC
ATCCGCTCCAGCAGCGAGATGCTGCAGCAGGACCGCCCCTCGGGGAGCAGTGTTGGTGAG
GTGGCAGCGATGGCCAACCGGTACGTTGGCCCACAGCCGGCGGCGGGGCGGAGCTACCTG
GTGCGGCTGCAGGGCCTGCTGCTCCGGCCCGTGGTGGGGCATCACGATGGCGGCGTAAGT
GTTGACAGTGAGGGCGGGCGAGCGGTGGCGGCTGAGGTGGGGAGCGGCGTGGTGGTGGTG
GTTGATGACGGGCATGAGCTGCGGGATCGCTGAGTTACCGCTGTGAGGGCCATACATCAT
GAGTGTAGGGAGAGAGGGTGTATGGTTTTGGCGTGTATGTAGATTAACATATGTATGTAT
GGTTGTTACAAAGAGAGGAGAGGAGAGGAGATTCCTGGAAGATTGT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_55539.1	1004	0.0	534 - 1004	99	464 / 471	CUST_40423_PI390587928	ABC21120
AK360340	1982	0.0	114 - 543	97	416 / 430	CUST_9174_PI390587928	ABC07013 ABC21120
MLOC_46157.1	311	4e-149	1 - 305	98	299 / 305	None	ABC21120
MLOC_48435.1	289	2e-148	4 - 289	100	286 / 286	None	ABC21120
MLOC_43436.1	326	3e-136	6 - 287	98	277 / 283	None	ABC21120
MLOC_75959.1	217	2e-97	1 - 215	97	208 / 215	None	ABC21120
MLOC_41941.1	238	8e-97	4 - 238	94	221 / 235	None	ABC21120
MLOC_1071.1	181	4e-85	1 - 181	98	178 / 181	None	ABC21120
MLOC_23624.1	553	5e-84	4 - 188	97	180 / 185	None	ABC21120
MLOC_19519.1	2184	1e-75	1 - 188	94	177 / 188	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_19519.2	1894	1e-75	1 - 188	94	177 / 188	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_19519.5	2034	1e-74	1 - 186	94	175 / 186	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_19519.3	2247	1e-74	1 - 186	94	175 / 186	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_19519.6	1792	1e-74	1 - 186	94	175 / 186	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_19519.4	2108	1e-74	1 - 186	94	175 / 186	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_19519.7	1835	1e-74	1 - 186	94	175 / 186	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_19519.8	1699	1e-74	1 - 186	94	175 / 186	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_31989.1	158	5e-74	1 - 158	99	156 / 158	None	ABC21120
MLOC_19519.9	1785	2e-73	1 - 184	94	173 / 184	CUST_34886_PI390587928	ABC05191 ABC08274 ABC21120
MLOC_47042.1	170	1e-70	1 - 170	95	162 / 170	None	ABC21120
MLOC_53439.1	182	1e-65	19 - 182	95	155 / 164	None	ABC21120
MLOC_30949.1	140	2e-63	1 - 139	99	137 / 139	None	ABC21120
MLOC_600.1	123	5e-54	2 - 120	99	118 / 119	None	ABC21120
MLOC_32513.1	303	3e-51	1 - 126	96	121 / 126	None	ABC21120