barSeed - Barley Seed Development Database

Probe CUST_9143_PI390587928

Source Contig U35_18846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9143_PI390587928	Hv_44K_v2	TAATATGGAATTTGGCTCAGGGGAAATATCAGTGGGTTAAGGTCCTTTTAGAATCCTAAA	1175	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249064.1	1322	7e-23	1183 - 1239	100	57 / 57	plus	ABC10506
MLOC	MLOC_6695.3	1100	7e-23	590 - 646	100	57 / 57	plus	ABC10506
MLOC	MLOC_6695.1	1893	7e-23	655 - 711	100	57 / 57	plus	ABC02537 ABC10506 ABC15661
JLOC1	JLOC1_4370.2	1841	4e-23	582 - 638	100	57 / 57	plus
JLOC1	JLOC1_4370.1	2024	4e-23	765 - 821	100	57 / 57	plus
Harvest35	U35_18846	1249	3e-25	1176 - 1235	100	60 / 60	plus

Contig Sequence (1249 bp)

>U35_18846 1249 Hv_44K_v2
CGACGACGAACACACGCCGGTGACGCCCAGCCAAGCTCCCGAGCCGCCTCTCGCCTGCCC
CTCGGCTCGCGCCGCGCCCGCAGGCAGCAGTAAGTATGCTCCCCCTCGCGCACCCCACCC
GCCATCCCCACCACCGCCCTGCATCTCGAGCCCCGCCTCCGGGGCGCCCTCCTGCCTTAG
CCCGAGCTCGACCTCGCCTTCCCCACCGCTCGTCCCATGCGCTCACGCTCATCCGACCGC
AGCCTCCGAGCGCGGAACAGGGTGGGAACACTGAAACCACCTCCGCCCCCGCCAGTAGCA
GCGTCCTGTCGTTCTTGTGCCCGCTTCTCAAGTTCTTCGGGGGCGGGGATCCTTCTCAGG
AGCGGAATGACATCGTGGAGGTGGCCACATCTTCTCTTTCAAGTTTAGCTAGACTGCCAT
GGGGATCAAGTGTTGCAGCTAGTAGTACTGAAAACATCACTGCACCAACAAGTGCCCTGA
CTCTTCAACTGTATGAGTTTGAGGCATGCCCCTTCTGTAGGAGGGTTAGGGAGGCCATGA
CCGAGCTTGATCTTTCTGCAGAGGTTTATCCTTGCCCAAAAGGATCACTGAGGCATAGAG
ATGTGGTCAGGAAAATTGGAGGGAAGGAGCAGTTTCCACTTCTTGTTGATGCAAGTACTG
GTGTCATGATGTATGAAAGTGGAGATATTGTGAAATACCTGTTCAGACAGTATGGACAAG
GAAAGAGCCCTTCTTTTGGCCTCCTTGAGAGTACAATTTTCACAGGATGGGTGCCTACTC
TTCTTCGAGCCGGAAGAGGGATGACAATGTGGAGCAAAGCTGGTGCGGTACCTGCAGAGA
AGCTGGAACTCTTCTCAATTGAGAATAACACCTACGCAAGGATTGTCCGCGAGGCTCTCT
GTGAATTGGAGCTCCCTTACGTTCTCCAGAACGTGGGAGAGGGGTCGTCGAAGATGAGTT
CGCTGCTAAGCATAGCAGGTTCTAAGCAGGTGCCGTATCTGATGGATCCAAACACTGGGT
TTCGATCGGGCGATCACAAGACGATACTGTCCTACTTGTTTCAGCAGTACTCCGTGGTCG
GCTAGCTTGTCTCTCAAATCTCTGCAAATCTGTACACACCTCTCGTATAGGTTGTCCTGT
CCCGGTAGAAAGAGAGCAAGCATGTATATTTGCCGTAATATGGAATTTGGCTCAGGGGAA
ATATCAGTGGGTTAAGGTCCTTTTAGAATCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g11290.3	332	8e-175
Arabidopsis v10	AT4G10000.1	333	3e-128	Thioredoxin family protein \| chr4:6260707-6263053 REVERSE LENGTH=333