barSeed - Barley Seed Development Database

Probe CUST_912_PI390587928

Source Contig U35_6362

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_912_PI390587928	Hv_44K_v2	TCGATCGACGAATAGATGAGCATGGTGGTCCTGGACGGGTCGACGGTGCGGTCCTTCGTG	125	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51904.1	1111	2e-24	477 - 536	100	60 / 60	plus	ABC01508
MLOC	MLOC_51905.1	342	2e-24	105 - 164	100	60 / 60	plus	ABC01508
JLOC1	JLOC1_33190.1	1120	8e-25	376 - 435	100	60 / 60	plus
Harvest21	ABC13325	356	3e-25	126 - 185	100	60 / 60	plus
Harvest35	U35_6362	357	3e-25	126 - 185	100	60 / 60	plus

Contig Sequence (357 bp)

>U35_6362 357 Hv_44K_v2
AAACCCATCCATCCACCGCTGAACCCACAGCAAACCAAATCCGCTGCCGGAAGTCTCCAC
TCCACTCTCCCCACTCCAGCAGCGACGACCGACCAGAGCCACCGAGAGAGCGCGGCCAGC
GGCCTTCGATCGACGAATAGATGAGCATGGTGGTCCTGGACGGGTCGACGGTGCGGTCCT
TCGTGGCGGACGAGGCGGCCTTCGCCCGCAGCGTGGACGCGCGCTTCGCGGCGCTCGACG
CCAACGGCGACGGCGTGCTCTCCCGCGCCGAGCTCCGCCGCGCGCTCGAGTCCTTCCGCC
TCCTCGACGGCGCGGGCTTCGGCTCCGCCGAGCCAGCCCCGCTCCCGGGGGAGGTCG

Homology of Contig U35_6362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None