- Probe CUST_9122_PI390587928
- Source Contig U35_18868
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9122_PI390587928 | Hv_44K_v2 | TTTTGTAAATCTTTGTCACCTAAACTGCATACTGCGTAGCTAAATTTGCACCCCTAAAAT | 495 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.685 | 1.361 | 1.100 | 0.974 | 0.442 | 0.387 |
| Raw | 185.101 | 234.969 | 166.422 | 235.802 | 37.098 | 35.223 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_39227.1 | 2334 | 2e-24 | 181 - 240 | 100 | 60 / 60 | minus | ABC12058 |
| JLOC1 | JLOC1_25567.1 | 932 | 8e-25 | 103 - 162 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC12059 | 558 | 3e-25 | 496 - 555 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18868 | 558 | 3e-25 | 496 - 555 | 100 | 60 / 60 | plus |
Contig Sequence (558 bp)
>U35_18868 558 Hv_44K_v2 CCCGAGCACAAGGACTATGGAGCTGAGCTTTTTGTGAATGGAGAGATTGTTCAGAGGTCT CCGGAGAGGCAGAGAAGGGTGGAGCCTGTGCCGCAGAGAGCATCAGACAGGCCGAGGTAT AACGACAGAACCCGCTACCAGCGGAGGAGGGAGAACCAGCAACGGTGATGAGCCGAGGTG CCCGATTGAAGATCAAATAACAAGCCCTGGTGGTTTCCGCCGGGTATAAATATCATCTAC GGAATAGAAGAACTGCATGTTCACTGTATGCCAACGCAAGGTGTTTTCTTTTCTTCAAGT TGGTGATCGCGCGTCTTGGATGTATCAAACTAGTTGTTAGGGAGCTTGGAACTATTTGGA ATTGCACGTTACCGTCAACTCTGCAGTCATGTGCGTTACCGTCAACTCTGCAGTCATGTG CGTTACCGTCAACTCTGCAGTATTGTGCGCTTGTAAATCTGGTTTGATGGATAAACTGCT ACTTTTGCCTGGAATTTTTGTAAATCTTTGTCACCTAAACTGCATACTGCGTAGCTAAAT TTGCACCCCTAAAATCAT
Homology of Contig U35_18868 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |