barSeed - Barley Seed Development Database

Probe CUST_9071_PI390587928

Source Contig U35_41229

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9071_PI390587928	Hv_44K_v2	AGAGAAGTCAAGAGATACTGCAATCTTCTGTTACTCGATTGGAATTTACAGTGCATTTAT	20	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78764.1	7911	2e-24	110 - 169	100	60 / 60	minus	ABC17101
JLOC1	JLOC1_52490.2	7869	8e-25	7743 - 7802	100	60 / 60	plus
JLOC1	JLOC1_52490.1	7859	8e-25	7733 - 7792	100	60 / 60	plus
Harvest35	U35_41229	597	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (597 bp)

>U35_41229 597 Hv_44K_v2
TTTTTTTTTTTTTTTTATCAATAAATGCACTGTAAATTCCAATCGAGTAACAGAAGATTG
CAGTATCTCTTGACTTCTCTTAAAAGCATAATTCTGCCACCGCTAGTTTTTAACATTTGT
AATATTCACCATGCTACAGTTTACATCGAGTTACACAGGTCCAGCAGCGTTTAGTTAAAC
AAAAATGTACACCAGACTTTGTCTAAGGCTCTTGGCTCGGAAGGGCTACCAACGCCGCTT
GCAAAAGAGAAACCAATTTCAGCCTTAGACTGGACATTGTGCGGCTAATAGACAGCTCGT
CTTCAGCGAAAGAGGCGTCGCTCTCTCCCACCTGCTGCTGAGCCTGAGCCTGAGAGACCT
GGCCTTCCAGGTAGCGCCGCAAACCAGGCTCGATGACATCTATCAGACCAAGAGATGCGG
GTGTGTGCATCCATCTCGAGACGATGAACCCGGCCAACAGATGCTGCCCTTTGAGCACCA
GCTCAGATATGAAGCACGGGAGCAGCACCTTACCAAACAGCAAGGACTTCTGATTCATCT
TAGATTCGGCTTCCCAGTGTGCGCAGAGATCGCGCTGGAACGACCTCGCGAGTTGTC

Homology of Contig U35_41229 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None