barSeed - Barley Seed Development Database

Probe CUST_9063_PI390587928

Source Contig U35_9391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9063_PI390587928	Hv_44K_v2	GCATCTGCAGAAAAATGGTGATCTGAAAACTGTTGCAGAACTTGAGAATGAAGGAACACG	764	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72178.1	1175	2e-24	332 - 391	100	60 / 60	minus	ABC12627
JLOC1	JLOC1_48011.1	1318	8e-25	792 - 851	100	60 / 60	plus
Harvest21	ABC19840	853	3e-25	765 - 824	100	60 / 60	plus
Harvest35	U35_9391	853	3e-25	765 - 824	100	60 / 60	plus

Contig Sequence (853 bp)

>U35_9391 853 Hv_44K_v2
GGTCTTCTCCGCCACTTGGACATTTCGCTTCGGCTTTTCGCCTCCTCGATCACGTGATCA
TCTCCTCTGCTCTGTTCCCCCGCCCGGCCACAGCGCCCTACACTACAGCAGTACGGCTAG
GCGGCGGCTCGCCTCCCCCAACGCCGCCGCGGACGCAAGGTTGGTGGTGGTGCCGGCGGC
GTCGGTCAGCAGCGGCCATCCATGGACTCCGGCGATGCACCTGAACGGATTCGCAAGGAA
ACGGGTTCCCGGAGCAGAGACGGCCTGCCTCAGCGTCACGCGACTGGAGCAGGTCCAGAT
GACAATCACCACGGGGGAGACCGCGTCCTCGCCAAGCGCCTCAAGGATGAATCGGCCGAC
GCATCGGAGCCGCCGCCGTCACGGCTGAAGCTGGAGCCTCATCCCGTTCAGAACAGAGAC
GAGCAATTCGTCTGGCCCTGGATGGGAGTGCTGGTCAATGTGCCCACCGAGTGGAAAGGA
GGGCGCCAGGTTGGGGAGAGTGGGAACCGCCTGAAGGAGCAGCTCTCGCGCTTCTGCCCG
CACAAGGTCATTCCTTTGTGGAACCACAGAGGCCACACCGGGAAAGCCATCGTTGAGTTT
GGAAAAGATTATGCTTCCTTCTGCAACGCCTTCAAGTTTGAGAACCACTTTGAAGCAGAA
GGATATGGCAAACGGGACTGGGAACAGCACAAGTATCGTGGGCCTGAGATGTTTGGGTGG
GTTGCAAGGGCTGATGATCGAAGAACCCCGGGGCAAATCGGAGAGCATCTGCAGAAAAAT
GGTGATCTGAAAACTGTTGCAGAACTTGAGAATGAAGGAACACGNCAAACCGACAAGCTG
GTAGCTAATCTAG

Homology of Contig U35_9391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g44230.2	557	5e-81	protein\|transcription factor X1, putative, expressed
Brachypodium v1_2	Bradi2g43797.1	533	4e-82
Arabidopsis v10	None