barSeed - Barley Seed Development Database

Probe CUST_9052_PI390587928

Source Contig U35_14403

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9052_PI390587928	Hv_44K_v2	AATATTTATGGGCCATTGTTTCTTCGATTTGTTGCTGGGTTGTGTGTAATCCGATCCTCA	565	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251871.1	814	3e-22	619 - 677	98	59 / 60	plus	ABC01431 ABC01433 ABC01437 ABC45712
MLOC	AK252249.1	810	3e-22	578 - 636	98	59 / 60	plus	ABC01431 ABC01433 ABC01437 ABC45712
MLOC	MLOC_19292.1	656	3e-22	539 - 597	98	59 / 60	plus	ABC01431 ABC45712
JLOC1	JLOC1_13385.1	952	1e-22	544 - 602	98	59 / 60	plus
Harvest21	ABC01438	625	3e-25	566 - 625	100	60 / 60	plus
Harvest21	ABC01431	844	5e-23	614 - 672	98	59 / 60	plus	ABC01431
Harvest35	U35_14403	625	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_14396	846	5e-23	614 - 672	98	59 / 60	plus

Contig Sequence (625 bp)

>U35_14403 625 Hv_44K_v2
GGGAAACCTTCGCCACCCCCCTCCCTTCCCCTGCTCTTTTCGCGTGATTCTCCCACAGAT
CGGCGCCGGTTGATTGTGATGGCATCCAAGCGCATCCTGAAGGAACTGAAGGACCTGCAG
AAGGACCCTCCCACATCATGCAGTGCAGGCCCTGCTGGTGAGGACATGTTTCATTGGCAA
GCAACGATTATGGGACCCCCTGACAGTCCCTATGCCGGCGGTGTTTTCTTGGTGAACATT
CATTTCCCTCCGGATTACCCCTTCAAGCCGCCAAAGGTATCTTTTAAGACGAAGGTCTTC
CATCCTAATATCAACAGCAATGGAAGCATATGCCTTGATATTCTTAAGGAGCAGTGGAGC
CCTGCTTTGACGATCTCCAAGGTCTTGCTCTCTATCTGTTCCCTGCTGACTGATCCCAAC
CCGGATGATCCCCTGGTTCCCGAGATTGCCCACATGTACAAGACCGACCGGTCAAAGTAC
GAGACGACAGCCCGCAGCTGGACGCAGAAGTACGCCATGGGTTGAAGACCTGCATCGTGG
ACAACTGAAATGTCGCTTCAAGAAAAATATTTATGGGCCATTGTTTCTTCGATTTGTTGC
TGGGTTGTGTGTAATCCGATCCTCA

Homology of Contig U35_14403 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g60410.2	149	1e-108	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi2g53430.1	149	1e-109
Arabidopsis v10	AT3G08690.1	148	1e-104	\| Symbols: UBC11, ATUBC11 \| ubiquitin-conjugating enzyme 11 \| chr3:2641487-2642489 FORWARD LENGTH=148