barSeed - Barley Seed Development Database

Probe CUST_9051_PI390587928

Source Contig U35_14404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9051_PI390587928	Hv_44K_v2	CGCACCAAGGTGTTCCACCCGAACATCAACAGCAACGGCAGCATTTGCCTTGACATTCTC	881	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365157	925	2e-24	353 - 412	100	60 / 60	plus	ABC01431 ABC01433 ABC01437 ABC38051 ABC38694
MLOC	MLOC_70097.1	734	2e-24	389 - 448	100	60 / 60	minus	ABC01431 ABC01433 ABC01437 ABC38694
JLOC1	JLOC1_46500.1	982	8e-25	283 - 342	100	60 / 60	plus
Harvest21	ABC01437	828	3e-25	335 - 394	100	60 / 60	plus	ABC01437
Harvest21	ABC01433	940	3e-25	338 - 397	100	60 / 60	plus	ABC01433
Harvest35	U35_14404	941	3e-25	882 - 941	100	60 / 60	plus
Harvest35	U35_14398	951	3e-25	338 - 397	100	60 / 60	plus

Contig Sequence (941 bp)

>U35_14404 941 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAGATAAGATCGATCGCGCACGGGGCCGAGAGGGAGAAGA
AAACTAGTTCGTCGGTAGGGTTTGGTGTCGGTGGGCGGCGATGGCGATGGAGGCGAGGAT
GAAGGGGACGGTCAAGTGGTTCAACGACACCAAGGGGTTCGGCTTCATCTCCCCCGACGA
CGGCAGCGAGGACCTCTTCGTCCACCAGTCGTCGATCAAGGCCGACGGGTTCCGCTCGCT
GGCCGAGGGCGAGGTCGTCGAGTTCTCCGTCTCGGAGGGCGACGACGGCCGCACCAAGGC
CGTCGACGTCACCGGCCCCGACGGATCCTTCGTGCAGGGCGGCGCGGGAGGTGGGGGAGG
AGGCGGGGGCGGCTTCGGATCCCGCGGCGGTGGCGGATCTCGCGGCGGGGGCGGCTTCGG
CGCCCGCGGCGGGGACGGATCTGGCGGGTATGGAGGTGGGTATGGCGGCGGCGGCGGTGG
TGGGTGGGGCGGTCAGAGGAGATCCGGCGGTGGAGGCGCCGGTGGGGCCTGCTTCAAGTG
CGGCGAGCCTGGCCACATGGCCAGGGACTGCTCGGTCAACGGCGCCGCTGGCGGCGGCGG
CGGCGGCGGCTGCTACAAGTGCGGCGAGCAAGGCCACATCGCCAGGGACTGCCCCGCCGG
CCGGGTTTGATCCCATGGCGTCCAAGAGGATCCTCAAGGAGCTGAAGGACCTGCAGAAGG
ACCCTCCCACCTCATGCAGCGCAGGTCCTGTAGGTGAGGACATGTTCCACTGGCAGGCCA
CTATCATGGGGCCCTCGGAGAGCCCGTTCACCGGTGGTCTATTTTTGGTCAACATTCATT
TCCCACCGGATTACCCCTTCAAGCCCCCGAAAGTCTCTTTCCGCACCAAGGTGTTCCACC
CGAACATCAACAGCAACGGCAGCATTTGCCTTGACATTCTC

Homology of Contig U35_14404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57220.4	108	2e-58	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi5g25460.1	149	2e-59
Arabidopsis v10	AT5G53300.1	148	5e-56	\| Symbols: UBC10 \| ubiquitin-conjugating enzyme 10 \| chr5:21632802-21633989 REVERSE LENGTH=148