barSeed - Barley Seed Development Database

Probe CUST_9045_PI390587928

Source Contig U35_14410

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9045_PI390587928	Hv_44K_v2	TGATGAACTGCATGCTTCTCTGGGCTTGTAGCAACTCTAGCAGATCGTATAAAACCTTGC	669	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.561	2.361	1.349	0.568	0.156	0.193
Raw	2717.787	2785.057	1407.063	960.973	90.647	123.260

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01547	756	3e-25	670 - 729	100	60 / 60	plus	ABC01547
Harvest35	U35_14410	756	3e-25	670 - 729	100	60 / 60	plus

Contig Sequence (756 bp)

>U35_14410 756 Hv_44K_v2
CGCAGCTCGCCCCCGTCTCCCGGATTTCGCCGCCGCCGCCGCTCGCCGCCCACGCTTCCT
ACCCGCCGACGAGATGACGAAGCGTACCAAGAAAGCTGGAATTGTCGGCAAATATGGTAC
ACGTTATGGTGCCAGTCTGCGTAAGCAGATCAAGAAGATGGAGGTGTCTCAGCACTCAAA
GTACTTCTGTGAGTTCTGTGGGAAGTTTGCTGTGAAGAGGAAAGCAGTTGGAATTTGGGG
ATGCAAGGACTGTGGGAAGGTGAAGGCTGGCGGTGCTTACACCATGAACACTGCCAGCGC
GGTCACTGTCAGGAGCACTATCCGTCGCTTGAGGGAACAGACTGAAGCATAAGTTGTTAC
TAGTGTTTTGTCCTAGTGAATCATCTGGGATTTTGCAGTTTAGACGATACTTTGGATTCA
GTTCCGTTGCCTGTTTAGTCAAGGATATCTTTGTACTTGGTGCCATGGATGTTCTGTTAT
GTTATTCTTCCACCCTTTTGAAAAAAAAAAAAAAATTCCACTGGTTTACTGTGGATTCTG
TTTTGCCTTCTGCAGTCCATGCTGTCTTCACGGTTAGGTATCGAACTCAGCTCTTAAGAT
TTGCACGAGCGAAATGTAGCCCACCTTCTCAAACTAGGACTTCCAGTTGGTTGGTTGTTC
CCTTTTGTATGATGAACTGCATGCTTCTCTGGGCTTGTAGCAACTCTAGCAGATCGTATA
AAACCTTGCAGGTTCTTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_14410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48320.1	93	2e-60	protein\|60S ribosomal protein L37a, putative, expressed
Brachypodium v1_2	Bradi2g46580.1	93	8e-61
Arabidopsis v10	AT3G10950.1	92	4e-57	Zinc-binding ribosomal protein family protein \| chr3:3423893-3424566 FORWARD LENGTH=92