barSeed - Barley Seed Development Database

Probe CUST_9023_PI390587928

Source Contig U35_26404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9023_PI390587928	Hv_44K_v2	TTTGGATGCCAAGATATGCTGATTGGTGCAATCAGAAACCAGCTGAACCACATCTTCCAT	222	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.064	1.009	1.175	1.316	0.564	0.541
Raw	277.857	429.382	421.514	778.886	114.218	116.779

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59859.7	1735	2e-24	1607 - 1666	100	60 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	MLOC_59859.2	1927	2e-24	1531 - 1590	100	60 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
JLOC1	JLOC1_38986.2	1940	8e-25	1466 - 1525	100	60 / 60	plus
Harvest21	ABC35374	597	3e-25	223 - 282	100	60 / 60	plus	ABC35374
Harvest35	U35_26404	597	3e-25	223 - 282	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_26404 597 Hv_44K_v2
GGGCCTGCAGGAAAATTACCCACCTTAAAAAAGCAACCTATGCGCCAAAAGCTAATCATA
AAGCATGATAATTTGAAGAAGCTCAGTCTATGGGGCTGTTCAGCAATAGATGCTTTGTAT
GTGAAATGCCCAGAGTTGATTGATCTGAACCTCAACTCCTGTACAAATCTACACGCAGAG
CGGCTGCTACTTCAGTGCCCAAACTTGAAGAATGTACATGCATTTGGATGCCAAGATATG
CTGATTGGTGCAATCAGAAACCAGCTGAACCACATCTTCCATGCAAGCGGCTAGCAGATG
GTTCGAAGCGGGTTCAACTCTCACAGTTCCCACAAGAGCAGTTACCGGAGGACAAAATAT
GGATTGGATTCAAGCGGTCAGAGTGCATTGTTCATCTTGATTCTTGATTAATAACAATAA
TCACATGACCATAGCTAGAGAACTGCTCATTATGCGCACTCTAATTTGTGAAATTAGACG
ATGGCGAGTATTTATTCATTTGTTTTGTGCACCTCCAAACCCATAATATATGTAATGTGC
TTGTTGTATAAGCTGCTACATGGAAGTGAAACTTTGCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_26404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g14250.1	576	4e-59
Arabidopsis v10	None