barSeed - Barley Seed Development Database

Probe CUST_8986_PI390587928

Source Contig U35_14444

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8986_PI390587928	Hv_44K_v2	CCTTTTGGATTGTGTAATAGTACGTACTCTTATGAAAACGGAGTACTAGTTTGGCGCATT	1639	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31792.1	1129	2e-24	941 - 1000	100	60 / 60	plus	ABC01289 ABC01294 ABC01300 ABC33585 ABC37518
MLOC	AK358923	1722	3e-22	1623 - 1681	98	59 / 60	plus	ABC01289 ABC01294 ABC01298 ABC01300 ABC33585 ABC37518
JLOC1	JLOC1_20842.1	1262	8e-25	941 - 1000	100	60 / 60	plus
Harvest21	ABC01292	872	4e-24	132 - 189	100	58 / 58	minus
Harvest21	ABC01300	1724	5e-23	1604 - 1662	98	59 / 60	plus	ABC01300
Harvest21	ABC01289	794	5e-23	719 - 777	98	59 / 60	plus	ABC01289
Harvest35	U35_14446	829	3e-25	733 - 792	100	60 / 60	plus
Harvest35	U35_14444	1841	3e-25	1640 - 1699	100	60 / 60	plus

Contig Sequence (1841 bp)

>U35_14444 1841 Hv_44K_v2
GCAGGGGCCGCCCGCTCCGCTCCGCTCCGTCCGTCCACCCGCTCCAGCCATCCGATTCGA
TCCGCCTCGGCTTCCTCTCCAAGCCACAGCTCTTCCGGCCATGGCCGCCACGATCCAGTC
CGTCAAGGCCCGCCAGATCTTCGACAGCCGCGGCAACCCCACCGTCGAGGTCGATGTGTG
CTGCTCCGATGGAACCTTCGCCAGGGCCGCCGTTCCCAGCGGTGCATCGACCGGTGTTTA
TGAAGCTCTGGAACTGAGGGACGGCGGGTCTGACTACTTGGGCAAGGGGGTTTCCAAGGC
TGTTGGCAATGTGAACTCCATTATTGCACCTGCTTTGATCGGCAAGGACCCTACCGCTCA
AACTGAGCTCGACAACTTTATGGTTCAGCAGCTTGATGGAACCAAGAATGAGTGGGGTTG
GTGCAAGCAAAAGCTTGGTGCTAATGCGATCCTGGCTGTGTCACTAGCTGTTTGCAAAGC
TGGAGCCAGCGTCAAGAAGATTCCACTGTACCAGCACATTGCCAACCTTGCTGGCAACAA
GCAGTTGGTTTTGCCTGTTCCTGCATTCAATGTCATCAATGGTGGATCCCATGCTGGAAA
CAAGCTTGCTATGCAGGAGTTCATGATCCTTCCTACTGGAGCTGCCTCGTTCAAGGAGGC
AATGAAGATGGGCGTTGAAGTGTACCACAACTTGAAGTCTGTTATCAAGAAGAAGTATGG
GCAGGATGCCACCAATGTCGGAGATGAAGGTGGTTTTGCTCCTAACATTCAGGAGAACAA
GGAGGGCCTTGAGCTCTTGAAGACTGCAATTGAAAAGGCTGGATACACCGGCAAGGTTGT
CATTGGAATGGATGTCGCTGCTTCAGAGTTCTACAATGACAAGGACAAAACCTATGACCT
CAACTTCAAGGAGGAGAACAACGATGGTTCGCAGAAGATATCTGGAGATAGCCTGAAGAA
CGTGTACAAGTCATTTGTGAGCGAGTACCCCATTGTGTCGATTGAGGACCCATTTGACCA
GGATGACTGGGTTCACTATGCTAAGATGACTGAGGAATGCGGAGAGCAAGTTCAGATTGT
TGGTGATGACCTTCTAGTCACCAACCCAACCAGAGTTGCGAAGGCAATCCAGGAGAAGTC
ATGCAATGCTCTTCTGCTGAAGGTTAACCAAATTGGATCCGTCACTGAGAGTATCGAGGC
CGTGAAGATGTCGAAACACGCTGGCTGGGGTGTCATGACCAGCCACAGGAGTGGTGAGAC
CGAGGACACATTCATTGCTGATTTGGCTGTTGGTCTGTCCACGGGCCAGATTAAGACTGG
GGCTCCATGCCGCTCAGAGCGTCTTGCCAAGTACAACCAGCTTCTGAGGATCGAGGAGGA
GCTGGGCGATGCCGCCGTGTACGCCGGCCTCAAGTTCCGCGCACCGGTGGAGCCCTACTA
AAAGGGGGACCTGCTCCAGGTTTTTGCGAAAACCGGTGTGTTCTTTAACCTCCGGAATGT
ACTCTGGTTGAAGCTCGTAGGATTTGAGGAAATAATGAATGTCCCGCATGTTTATGTGAA
CGGAACGACGGATATGTACCCCCAAAACTCGCTCCAATTTTGGTCCTTGTGGATATGTAC
CTGATTCGGCCATATGAACCCTTTTGGATTGTGTAATAGTACGTACTCTTATGAAAACGG
AGTACTAGTTTGGCGCATTAAAAAAAAAAAAAAAAAAAAATGTTCTTCCGTCGGTTTGCT
CTCCCTTTCTTGCATATGCTTCTCAAAAAAAAAAAAAAAAATCTTGTTTTCATCTTTGTT
TGGCTCTTTCAATTCCATCTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g08550.1	481	protein\|enolase, putative, expressed
Brachypodium v1_2	Bradi3g22550.2	447
Arabidopsis v10	AT2G36530.1	444	\| Symbols: LOS2, ENO2 \| Enolase \| chr2:15321081-15323786 REVERSE LENGTH=444