barSeed - Barley Seed Development Database

Probe CUST_8940_PI390587928

Source Contig U35_4986

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8940_PI390587928	Hv_44K_v2	ATAAAGTGGCTATTCTTTCTGTTGAGTCCTATGCAGCCCATGCATAAAGTGAGCGCAAGC	1296	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37273.8	2420	2e-24	2354 - 2413	100	60 / 60	plus	ABC11852
MLOC	MLOC_37273.7	2421	2e-24	2355 - 2414	100	60 / 60	plus	ABC11852
MLOC	MLOC_37273.5	2408	3e-21	2355 - 2408	100	54 / 54	plus	ABC11852
MLOC	MLOC_37273.6	2488	3e-21	2435 - 2488	100	54 / 54	plus	ABC11852
JLOC1	JLOC1_24120.3	2523	8e-25	2433 - 2492	100	60 / 60	plus
JLOC1	JLOC1_24120.2	2520	8e-25	2430 - 2489	100	60 / 60	plus
JLOC1	JLOC1_24120.1	2526	8e-25	2436 - 2495	100	60 / 60	plus
Harvest21	ABC11852	1356	3e-25	1297 - 1356	100	60 / 60	plus	ABC11852
Harvest35	U35_4986	1356	3e-25	1297 - 1356	100	60 / 60	plus

Contig Sequence (1356 bp)

>U35_4986 1356 Hv_44K_v2
GATACGAAGGAGGGCTGGAGCTGATGACAAGCCATTAAGAATGGTCAAAACTGTGCTGCA
TGAACTTGTCAAGCTACGAGGCACAGCAATAAAAGGTCACCTTTCAATGGTTCCTATAGA
CGCTGAGCCTCAGCCAATCATCCTGGCATACATTGATCTTAATCTTCAGACCCTTGCAGC
AGCTAGGATGTTAACCCCATCTGGACCTATGGGTCAAACTCACTGGGGTGATGCTGCATC
GAACACTCCAAATCCATCAATTCATTCAACGGATGCACAATTGAAGCAAGAGCTTGCTGC
CGTATTCAAAAAAATCGGTGACAAGCAAACATGTACGATTGGTTTGTATGAACTCTACCG
GATAACCCAGCTGTACCCAAAGGTTGATATATTCGCTCAGCTTCAGAATGCAAGCGAAGC
ATTTAGAACGTACATCAGAGATGGGCTAGCTCAGGTGGAGAAGAATGCCGCAGCTGGAAG
AACACCCTCTAGTCTTCCATTGTCAACGCCACCTCCAATAGCATCAATACCCTCTCCAAA
GTTTGCACCTTCTCCTGTTCATACAAAATCGATAAGTAGCAAAACGGATTGTAATGAAGA
CGACCCCTTCAGAGTCCAAGGAGACTCTGATTTTAGGTTACAATCAGATCAACAGACCGA
TAGATTCCAATCCTCAGGGACATTGGATGCTCTCAGGGAAAGGATGAAAAGCATCCAAGC
CGCAGCTGTAGGTGGCAATTTCGATGGACCTCAGACTCGGCCATTGTCAAGTACTAATGG
CAGTACTCTCCATGGGGGGGCACGAGTGGATGGTGAGCCACAAACACAAAGTAATATTCC
ACCCATGGACGAGAGAGCATTATCTGGGCTGCAAGCACGGATGGAGAGGTTAAAGAGTGG
GTCTATGGAACCACTCTAAATATAGTTGACAGTACTATGAGAAATACCGACCATTGTAAT
TGACTGTAAATTTGCAGCATAGTCATGCTATTTGTAGATAGGTATGTCGAGGTACTACAT
GATGCGGGGCCGACGTTTTGTAACCCCCGTTCCTGGTCAACCCATTCTTGAATAGTATTC
TGGTGTAGTTGTAGAGAAGCTAGTCAGAGGTTTTGCTTGTAGCTTGCCCGTTGAGGGCCT
AATTAGTATTTTGACACATTTTTTGGTCCGATTGAGTTTTCCTGTGTTGTATAGCAATAC
AATTGAGTGTGATGAATTAACTGGATCAGTACGATGCGGTTAGGGGTACACTAGTGTTGG
CGTGGCTTCTTAGATTTTTGTGATGTAAAAATTTGCATAAAGTGGCTATTCTTTCTGTTG
AGTCCTATGCAGCCCATGCATAAAGTGAGCGCAAGC

Homology of Contig U35_4986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g53267.1	1994	7e-166
Arabidopsis v10	AT2G35630.1	1978	4e-93	\| Symbols: MOR1, GEM1 \| ARM repeat superfamily protein \| chr2:14966828-14980361 FORWARD LENGTH=1978