barSeed - Barley Seed Development Database

Probe CUST_8932_PI390587928

Source Contig U35_1001

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8932_PI390587928	Hv_44K_v2	AGGCGGAATCGTGTAGCTTTATTGGTGAGATAATATTATGATGTGGTTCTGTTCAAAAAA	1082	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57646.1	1104	9e-22	763 - 817	100	55 / 55	plus	ABC03064
MLOC	AK250288.1	1150	3e-21	1097 - 1150	100	54 / 54	plus	ABC03064
JLOC1	JLOC1_37389.1	943	5e-22	763 - 817	100	55 / 55	plus
Harvest21	ABC03064	1148	3e-25	1078 - 1137	100	60 / 60	plus	ABC03064
Harvest35	U35_1001	1153	3e-25	1083 - 1142	100	60 / 60	plus

Contig Sequence (1153 bp)

>U35_1001 1153 Hv_44K_v2
CAGCTGAAACCCCACGCAGACACAGCTCCGCTCCGCCCTCACGCACCTCACTCCGGCCAC
CTCCTCCCACCCACCGCCGCCGGCGGCGCCATGGAGGTCGGCGGCGAGGAGTTCGCGGTC
GGCGTGGTGATCTCCGCGAAGACCACCCTCGGGGAGGAGTTCGAGGGCCAGATCGTCTCC
TTCGACCGCCCGAGCAACCTCCTCGTCATCCAGGAGGGCGTGGGCAGGGCGGAGAGGGGC
GAGCGGCGGAACGTGAGGGTGCTCAAGGCCAACTACATCCAGGAGTTCTCCGTCGTCGGC
AAGTACGACGACCCGCTCGACCCGGCTGGCTGTGTGCTCGACCTCGCCGCCATCCACGCC
AGGGAGGAGGCCGCCCTCAGGCAAGCTGAGATTGAAGCTGAGAGAATTGGTGTTGGTGTC
ACCCCAGAAGCTCAAAGATTATTTGATGCATTGTCAAAGACGCTTCCAGTTCATTGGGAC
AAGACCGACATTGTTGTAATGAAGGAGGTTCGTGTATGCAGTCCCTACCTGCCTGAAAAT
GTCAGCGGCGGAACATCAGCTGCTAATGAACGGGTTAAGAAAGTGCTGGACTTTGAGAGG
AAAAGACAACATGTGCGTGTACCTGGCCAATTCTAACTTATTCGACTTGACAATTTTTCA
CCTCAACTCCTGCTGTGATCTGTTTCTAAATCCGACCTTATTCATTCAGTTTCGTCAGTT
GAATCTTTTAAAAATCTGTTTCAGCATGTTGTTCTCACAAACTACCACACCAGCTAGCTT
ATTGATACTCTGCGTTAGATGCCATATGTGGTGGTGGTGAATAATTGCAGCACACCGTGC
TGATAATTCATATGGCTGATAGTGAAAGGTTGTGTGACTGAAGCAAACCAAGGTAAGAAA
ATAGATTGGTGGCACTGAAAGAATAGGAAGTTGTATAACAAACTAAGAAAAGATGCGGAG
CCAAGGCAAAACTGAAAATTAGTCTGTCAGACTTTGTATTGCTTTTCCTGGTGGAATAAT
ATTTCCAGCTTGTGCTGTTGTATTCTAAAAAAAAAAAAAAAATCCGTGGTATTGGAGATG
CGAGGCGGAATCGTGTAGCTTTATTGGTGAGATAATATTATGATGTGGTTCTGTTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_1001 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50830.1	182	3e-91	protein\|expressed protein
Brachypodium v1_2	Bradi3g59590.1	257	3e-94
Arabidopsis v10	None