barSeed - Barley Seed Development Database

Probe CUST_8916_PI390587928

Source Contig U35_1011

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8916_PI390587928	Hv_44K_v2	GTAGCTTATAACGTCTGGGTGGTTATGTGGTGATTATTATGCTGGCCGTTTCATGTTAAA	1138	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.240	1.324	1.133	0.919	0.420	0.459
Raw	29613.133	48028.033	36923.767	46013.133	7553.503	8984.197

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369519	1238	7e-23	1112 - 1168	100	57 / 57	plus	ABC03129 ABC03130 ABC40547
MLOC	MLOC_57006.1	1366	7e-23	25 - 81	100	57 / 57	minus	ABC03129 ABC03130 ABC40547
JLOC1	JLOC1_36901.1	1458	4e-23	1265 - 1321	100	57 / 57	plus
Harvest21	ABC03128	1196	3e-25	1122 - 1181	100	60 / 60	plus
Harvest35	U35_1011	1213	3e-25	1139 - 1198	100	60 / 60	plus

Contig Sequence (1213 bp)

>U35_1011 1213 Hv_44K_v2
CGCCTCCTCCTCCTCCTCCCCCGCATCCCATTCTCCCCCAAATCGGCCGAGTAAACCCTA
GCTAAACCCCCGGCGGCTCCGGCGAGATGAACTTCAAGGGCGCGCGGATGCCGAGCGCGC
CGGCGGGCGTGGGCGCGCTGGTCAAGCTCGGGCTGCTCGGCGGCGCCGCGCTCTACCTCG
GCAACAAGACCCTCTACAACGTCGAGGGAGGCCACCGGGCCATCGTCTTCAACCGCCTCG
AGGGGATCAAGGACAAGGTCTACCCGGAGGGGACCCACATCGTCATCCCCTGGTTCGAGA
GGCCCATCATCTACGACGTCCGCGCGCGGCCCAACCTCGTCGAGAGCACCTCCGGGAGCC
GGGATCTCCAGATGGTGAGAATTGGTCTTCGTGTTCTTACACGACCCATGCCAGAGAGAC
TACCAACTATGTACAGGACCCTGGGGGAGAACTACAATGAGAGAGTGTTGCCTTCAATCA
TTCATGAAACACTCAAAGCTGTGGTTGCACAATACAATGCCAGTCAGCTAATCACACAGA
GAGAGGCTGTGAGCAGGGAGATCAGGAAGATTCTGACAGAGAGGGCAAAGAACTTCAACA
TCGCTCTGGATGATGTGTCCATTACCAGTCTCAGCTTTGGTAAAGAGTTCACTCATGCCA
TTGAAGCCAAACAGGTTGCTGCCCAGGAAGCTGAGCGCGCCAAGTTCATTGTTGAGAAGG
CTGAGCAAGACAAGAAAAGTGCAATTATCAGGGCACAGGGAGAGGCAAAGAGTGCCGAGC
TGATTGGTAATGCCATCGCCAACAACCCTGCTTTCGTTGCACTCAGGCAGATTGAAGCCG
CCAGGGAGATCGCCCACACCATTGCAGTCTCCAACAACAAGGTGTTCCTGGACTCAGGCG
ACCTGCTGCTTGGGCTCCAGTCGCTCAAGATGTTGAACAACAACAACAAGAAATGAGACC
GTTTCCTGTCACGCACGTTGCGGTTACCATCGACCCGTCTCCATTGAAGAAAGTACTTTT
GAGAGGAATGAACGCTTAGTTTCTGGCATTCCCAACCCGAAAACAAGAAAGACGCCCTTG
CTACTGTGAACTGTTTGTGCACTTTTTCAAGTGAACCTGTCGGCTGCTATTGCTGTGCGT
AGCTTATAACGTCTGGGTGGTTATGTGGTGATTATTATGCTGGCCGTTTCATGTTAAAAA
AAAAAAAAAAAAA

Homology of Contig U35_1011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62490.1	291	8e-150	protein\|prohibitin-2, putative, expressed
Brachypodium v1_2	Bradi1g02170.1	291	6e-156
Arabidopsis v10	AT4G28510.1	288	7e-135	\| Symbols: ATPHB1, PHB1 \| prohibitin 1 \| chr4:14084970-14086372 REVERSE LENGTH=288