barSeed - Barley Seed Development Database

Probe CUST_8897_PI390587928

Source Contig U35_1030

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8897_PI390587928	Hv_44K_v2	AAATTGTTGGGCATCGTCGTTAATTATTGTGTATTTTCCCAAGCCTCGTGGAGGAAAAAA	1645	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16644.2	1985	2e-24	1120 - 1179	100	60 / 60	minus	ABC02986 ABC33875
JLOC1	JLOC1_11476.1	1986	8e-25	1124 - 1183	100	60 / 60	minus
Harvest35	U35_1030	1716	3e-25	1646 - 1705	100	60 / 60	plus

Contig Sequence (1716 bp)

>U35_1030 1716 Hv_44K_v2
TCTTACCTCTCGAAAAACAAAGCAAACCACAGCACCAGGGCACAGGCGTGGCGACGTGCC
TAGCCGGATCTGAGAGGTACGCTGAGCCCGGCACGACCTTGCCTTGTGAAGACGAATTCT
GGCTGACAGATAAAAATCTCCACCGCATCCGCAAGCGCGAACTCCCTCCCGGATCTGCAG
CTAGCTGCCTCCCGATCCCCCTCGCCTCGGCCGAGATCCTTCCTCCGGTGAGAACCAAGA
TGTACTCGTGGGAGATGCTGTCGTTCAACATCCACGATGGGTTCCTGGAGGCGATCGTGC
GGGGGAACCGCTCGGGACTCCTCACCCAAGCCGATTACAACAACCTCTGCCAGTGCGAGA
CCCTCGACGACATCAAGATGCACCTCTCCGCCACCGAGTACGGTCCATACCTCCAGAACG
AACCTTCTCCCTTGCACACAACAACAATCGTCGAGAAGTGCACTCTTAAGTTGGTTGATG
AATACAAACACATGTTGTGCCAGGCGAATGAACCTCTATCTACATTCCTACAATACATAA
CGTATGGACACATGATCGATAATGTTGTCCTTATTGTTACTGGGACATTGCATGAAAGAG
ATGTCAATGAACTGTTGGAGAAATGCCATCCATTGGGCATGTTTGATAGCATTGCATCGC
TTGCAGTTGCTCAAAATATGCGTGAGCTTTACAGGCTGGTTCTAGTTGATACACCCTTAG
CACCGTACTTCTCAGAGTGCATTACATCTGAGGATCTGGATGACATGAATATTGAGATCA
TGAGGAACACACTCTACAAAGCGTATCTTCAGGATTTTTACAAATTTTGTGCGAAACTAG
GTGGTGCGACGGCTGACATTATGTGTAATCTCCTTTCATTTGAAGCTGACAGAAGAGCTG
TAAACATTACAATAAACAGTATTGGGACTGAGCTGACTAGAGATGACCGCAGGAAGCTGT
ACTCCAATTTCGGTCTATTGTTTCCATATGGTCATGAAGAGTTGGCTGTCTGTGAAGATG
TTGACCAGGTGCGTGGTGTAATGGAGAAGTACCCCCCATACCAGTCTATTTTTGCAAAGA
TATCATATGGGGAAAGTCAGATGTTGGACAAGGCCTTCTATGAGGAGGAAGTAAAGAGGC
TGCGCCTGTCATTCGAACAGCAGTTCCACTATGCTGTTTTCTTTGCGTACATGAGGCTAC
GAGAGCAGGAGATAAGGAACTTGATGTGGATCTCCGAATGCGTTGCCCAGAACCAGAAGA
ACAGGGTCCATGACAGCGTCGTGACGATCTTTTAATCGGCCCCTATTACTGTGCATATGG
CTGTACAAAAGGCCCGCTTTGATGATGGCACAATCGATTGCACTCTTTATAAGCTCATGA
TTTGTTATTCCCCTTGTTCCTATTTTCTATGCGGCTGAAAAGCTAGAACTGGAGTAGTGT
ATCATTATTTGTTTTTGTAGCAAAATAAAAGGCGCAGTTGTACGGTAAACTAAATAAATG
ATGTTTATTTCCGTAGTGGGTGGCACTATTTGTGCAGTTTGTTGGCAATGTAAAATGTAC
ACCCAAGATATCAAATGGCTTGTTGGCAAAACTCTTTTACTCCATTAAAAAAAAAAAAAA
CTTGTGCAGCTTAGAAAGGGCATGGAAATTGTTGGGCATCGTCGTTAATTATTGTGTATT
TTCCCAAGCCTCGTGGAGGAAAAAAAAAAAAAAAAG

Homology of Contig U35_1030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g40470.1	352	protein\|vacuolar ATP synthase subunit d, putative, expressed
Brachypodium v1_2	Bradi2g42100.1	352
Arabidopsis v10	AT3G28715.1	351	ATPase, V0/A0 complex, subunit C/D \| chr3:10778025-10780350 FORWARD LENGTH=351