barSeed - Barley Seed Development Database

Probe CUST_8896_PI390587928

Source Contig U35_1031

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8896_PI390587928	Hv_44K_v2	ACACACTAATTCGTTGAGTGATGTCCTCTAGATTCAGACTTAAATTATGTTATACGCTGG	1262	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.059	1.884	1.116	0.840	0.382	0.404
Raw	468.097	653.152	346.693	406.661	65.908	75.148

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_20034.1	948	8e-25	849 - 908	100	60 / 60	plus
Harvest21	ABC03268	1282	3e-25	1198 - 1257	100	60 / 60	plus	ABC03268
Harvest35	U35_1031	1347	3e-25	1263 - 1322	100	60 / 60	plus

Contig Sequence (1347 bp)

>U35_1031 1347 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGCTTGCCAGAAAAAGAAAAAACTGATCTACAAGCAGGGGGG
GCCCTCTCGCTCTCCACAAACCCTCCTCTCTTCTTCGTCTCCGTCTCGCCGCACCCCACG
CCGACGACGCGATGATTCCCAACCTCTCCGCCCTCGAGAACCACTTCGGCGCCGCCGCTG
CTGGCAGCGACGACTTCGGCGGCCTCTTCTCCGCCGACACCGCCGACCAGCTCGCCCTCG
AGTTCCCCACCTGCAACGACTTCGATGGGTTCCAGAAGGCAACCAAGGAGATGGTCAACA
ACAAGAAGGGGACGACCACGCTCTCCTTCATCTTCGACAAGGGCGTCATCGTCGCCGCCG
ACTCCCGGGCCAGCATGGGCGGCTACATCTCTTCACAAACTGTGAGGAAAATCATTGAGA
TTAATCCCTACATGCTGGGAACCATGGCTGGAGGTGCTGCTGATTGCCAATTTTGGCATA
GAAACTTGGGGGTCAAGTGCCGGCTCCATGAGCTCGCGAACAAACGGAGGATCTCCATTG
CTGGTTCTTCAAAGACGTTGGCTAATATCCTTTATTCATACCGCGGGATGGGACTTTCAA
TCGGTACAATGATTGCTGGATTTGATGAAACTGGTCCGGGCTTGTACTATGTTGATAGCG
AGGGTGCAAGGCTCAAGGGAAGCCGATTCTCTGTTGGTTCTGGCTCTCTATATGCTTATG
GCATCTTGGATGAGGGTTACAAATTCAACATGTCAGTTGAGGAAGCTGCTGAGTTAGCAC
GGCGGGCTATTTATCATGCAACATTCCGTGATGGAGCTAGTGGTGGCTGTGTTAGTGTCT
ACTACGTCGGCCCTGACGGCTGGAAGAAGTTGTCCGGAGATGATGTCGGAGAGCTGCATT
ACCACTACTACCCAGTCCAGGCGGCTCCCGTCGAGCAAGAGATGGCCGAGGCCCCTTCTG
CGTCAACCTGATTAATGTCGTACGAAATCCTGTGAACTGTGCTGAAGCACCTTGTTTTAT
GGACTTGGGGCCTGTTTGTCTCCTCCTCGACATTAGAGTGTTCTCCTCCGACTTACGCAT
CGGTTATGGCGGTGTGGTTGTAGACTGATGAATGTTATAGATGTTTTCATTGAAGTTTCA
TTTGAATTCGTTTAAAAAAAAAAAAAAAAACGCTATCTCCGTTATACTAAATATTGTGTT
GCTGCTGAAAAAAAAGGAAAAAGCAGCTGGTCATGCTTCAAGCATGGAGCTGTGTACATT
GTACACACTAATTCGTTGAGTGATGTCCTCTAGATTCAGACTTAAATTATGTTATACGCT
GGAAAATAAATGTAGAATGNCCCATGG

Homology of Contig U35_1031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06030.1	278	3e-155	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi1g49140.2	278	4e-175
Arabidopsis v10	AT3G26340.1	273	3e-137	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein \| chr3:9650600-9652572 REVERSE LENGTH=273