barSeed - Barley Seed Development Database

Probe CUST_8894_PI390587928

Source Contig U35_1033

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8894_PI390587928	Hv_44K_v2	AAGCCAAGCATGTATGTATGGCTTTTTATGCAATACTTGAGTGAGATTTGCAGGAAAAAA	597	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.594	1.358	1.198
Raw	3.359	3.643	3.118	4.111	4.272	3.447

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361150	1440	2e-23	1260 - 1317	100	58 / 58	plus	ABC03239 ABC03241 ABC03243 ABC39533 ABC42502
MLOC	MLOC_39593.1	237	2e-23	179 - 236	100	58 / 58	plus	ABC03239 ABC03243 ABC39533
JLOC1	JLOC1_25822.1	341	1e-23	184 - 241	100	58 / 58	plus
Harvest21	ABC03239	1348	4e-24	1246 - 1303	100	58 / 58	plus	ABC03239
Harvest35	U35_1033	658	3e-25	598 - 657	100	60 / 60	plus
Harvest35	U35_1034	726	4e-24	655 - 712	100	58 / 58	plus

Contig Sequence (658 bp)

>U35_1033 658 Hv_44K_v2
CAGTGCGCCAACTTCCGCGACCACATCTACAACGGCACCAACGTCGACCCGGCGTTCGCC
GCGCTGCGCAAGCGCACCTGCCCCGCCCAGCCGCCCAACGGCGACATGAACCTGGCGCCG
TTCGACGTGCAGACGCAGCTCGTCTTCGACAACGCCTACTACTCCAACCTGGTCGCCAAG
CGCGGCCTGCTCAACTCCGACCAGGTGCTCTTCAACGGCGGCTCCCAGGACGCGCTGGTC
AGACAGTACGTCGCTAACCCGGCGCTCTTCGCCTCCGACTTTGTGACGGCGATGATCAAG
ATGGGGAACATCAAGCCGCTCACCGGAACCGCCGGCCAGATTAGGCGCAACTGCAGGGTC
GTCAACAGCTGATCGGTCCGTCGTCTCATCATTTATACGTGGTAGATGTATATATGTGCT
TAAAATGTGTACGTGAAGTTAGGTTGGCTACGTACCAACCAGGTAGCATGCATGTCAGAA
TAAGAGCCGTTTGGTTCAGATAATGCCTGGGTAAGTAGCCCTCAAGCTCCAGGGTTGTAA
GATAGTTGCTTCATCATGTAAGTCGCTCCAGCTCGTGTGCATGCAATCCTCTAGTGGAAG
CCAAGCATGTATGTATGGCTTTTTATGCAATACTTGAGTGAGATTTGCAGGAAAAAAA

Homology of Contig U35_1033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14430.1	328	8e-62	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g09120.1	320	5e-64
Arabidopsis v10	None