barSeed - Barley Seed Development Database

Probe CUST_8893_PI390587928

Source Contig U35_1034

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8893_PI390587928	Hv_44K_v2	CTGATCCGTCCGTCGTCTCATCAATACGTGTTACATGTATATATAGTCGTAAAATCTAAA	421	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.591	1.303	1.740	1.509	0.771	0.867
Raw	64.787	224.377	255.072	339.623	59.424	74.509

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79567.1	1416	9e-22	1207 - 1268	97	60 / 62	plus	ABC03239 ABC03241 ABC03243 ABC39533 ABC42502 ABC45380
JLOC1	JLOC1_52982.1	1554	5e-22	1172 - 1233	97	60 / 62	plus
Harvest21	ABC03239	1348	3e-25	1013 - 1072	100	60 / 60	plus	ABC03239
Harvest21	ABC03243	1252	2e-22	159 - 220	97	60 / 62	minus	ABC03243
Harvest35	U35_1034	726	3e-25	422 - 481	100	60 / 60	plus
Harvest35	U35_1037	1495	2e-22	1101 - 1162	97	60 / 62	plus

Contig Sequence (726 bp)

>U35_1034 726 Hv_44K_v2
TGTGCCCGCGCGACCTCACGGCGCTCTCCGGCGCGCACACCATCGGCTTCTCGCAGTGCG
CCAACTTCCGCGACCACATCTACAACGGCACCAACGTCGACCCGGCGTTCGCCGCGCTGC
GCAAGCGCACCTGCCCCGCCCAGCCGCCCAACGGCGACATGAACCTGGCGCCGTTCGACG
TGCAGACGCAGCTCGTCTTCGACAACGCCTACTACTCCAACCTGGTCGCCAAGCGCGGCC
TGCTCAACTCCGACCAGGTGCTCTTCAACGGCGGCTCCCAGGACGCGCTGGTTCGCCAGT
ACGTCGCTAACCCGGCGCTCTTCGCCTCTGACTTTGTGACGGCGATGATCAAGATGGGGA
ACATCAAGCCGCTCACCGGAACCGCCGGCCAGATTAGGCGCAACTGCAGGGTCGTCAACA
GCTGATCCGTCCGTCGTCTCATCAATACGTGTTACATGTATATATAGTCGTAAAATCTAA
AATATGTACGTAAAGTTAGGTTGGCTACGTACAAACCAGCTAGCATGCATGTCAGAATAA
GAGCAGTTTGGTTCAGATAATACCTGGGTAAGTAGCCCTCAAGCTCCAGGGTTGTAAGAT
AGTTGCTTCATCATGTAAGTCGCTCCAGCTCGTGTGCATGCAATCCTCTAGTGGAAGCCA
AGCATGTATGTATGGCTTTTTATGCAATACTTGAGTGAGATTTGCAGGAAAACTGAGAGA
GGAAAC

Homology of Contig U35_1034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14430.1	328	2e-73	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g09120.1	320	1e-74
Arabidopsis v10	AT5G05340.1	324	2e-51	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324