barSeed - Barley Seed Development Database

Probe CUST_8886_PI390587928

Source Contig U35_17678

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8886_PI390587928	Hv_44K_v2	CCCAGCTGAGCACATGTACTCCTATCTTTAGGGGAGCAAACAATAACTGTCTGTACCAAA	977	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249206.1	1065	2e-24	976 - 1035	100	60 / 60	plus	ABC07975
MLOC	MLOC_27541.1	732	2e-24	564 - 623	100	60 / 60	plus	ABC07975
JLOC1	JLOC1_18590.1	747	8e-25	578 - 637	100	60 / 60	plus
Harvest21	ABC07975	1060	3e-25	48 - 107	100	60 / 60	minus	ABC07975
Harvest35	U35_17680	641	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_17678	1084	3e-25	978 - 1037	100	60 / 60	plus

Contig Sequence (1084 bp)

>U35_17678 1084 Hv_44K_v2
GGCCTGGATCGATCCCAGATTGTTCCTTCCCCGATCGAAGCCGACGAGCTCAGCAGCCGC
CGGCGCCGGAGCCGGAGCGGGGACGCCTCGCCGCCGTCTCCCCTGGAAGGAAAAAAGATG
GAGCCTGAAAGGAAGCCTCTGAGTTTGCTGGAGCTATGCGTCCGGAGCGCCGTCGACAAC
CTCAGGTACATGAACAGCGTGGACAACTTGGAGATGGGCCTGCTCAAGAGAATCCTGCCC
CACTGCACCTTGGAGCAGCTGACCCACATCGAGAGCTGTACGCAGATGGACCTTACCGGC
GTCACCGATGTGCTGTGGAAGAGGTTCTTCCAGCGGGAATTCGGTGAGGCTGATATGAAC
GTTGCCATCAAGAGAATGAAGGAGAGCGGAGTGCGTTACAAGTGGAAGAAACTCTTTGAG
GCAAAAACAGAAAAGCAAAAGCAAGTTGAACAAAGAATGTCTGCGGGACTCAGAAACAAA
TATGAAGCAGCAAACGCCGCGAAACAAAGCAAACAAATTAAAGTTTGCACGAAGATCCCA
CCAAACAGCAAAAGAAGTTTCTGGGGAGGAAGTGGATCCAGCAGCCTATCCAACTCCAGC
TACAAGAGCCCTATATTGAAAAAGGCAAGGATGGAGGTTGACAGCCGGGCGAAAATGCAA
GCTGCTATCCAAAGGAACACTGTTGCAAGGTCATCACAGCCAGCAAGGCTGACCTTTCCT
AGCGATCAGACATCGAGGACGACGACAATTCATCGACCTAATTCAACCATAACCATCACC
AAACCAACTGGTCCAAACAGGCCGATGCAAAAGCAGAACACCAGACCCAAATTTTAGAGG
CCACTGCCATGGCATCATGCTTGCGACGGCGGAGTTCGCCATGGTTGCGCGGAAACCTTC
TTTCCTGTGGACAAATCAACACCGCTTGCCATTCAACAAGTCTTTGCGAGACAGGAAATA
GTCTTGTTTGTAGTTGCCCCAGCTGAGCACATGTACTCCTATCTTTAGGGGAGCAAACAA
TAACTGTCTGTACCAAACATTTTTTTAATATAAATATGATTCAATCAAAAAAAAAAAAAA
AAAA

Homology of Contig U35_17678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g07280.1	285	3e-89	protein\|expressed protein
Brachypodium v1_2	Bradi3g15930.5	242	8e-104
Arabidopsis v10	None