barSeed - Barley Seed Development Database

Probe CUST_8848_PI390587928

Source Contig U35_43955

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8848_PI390587928	Hv_44K_v2	ACAAACCGAATTCAAAGGATCGGCACACTGCAAAAGCTAACTGCAATAATCCATGGCCTC	243	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55350.1	1962	7e-23	1712 - 1771	98	59 / 60	minus	ABC13312 ABC41288
JLOC1	JLOC1_35690.1	1387	4e-23	1283 - 1342	98	59 / 60	minus
Harvest21	ABC41288	463	3e-25	244 - 303	100	60 / 60	plus	ABC41288
Harvest35	U35_43955	463	3e-25	244 - 303	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_43955 463 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAAAAGGGCTATACATGGTTGACCATCAAATACTGCACGAA
TTTCATCGTTGTATTATGTGACATCGGCGTACTCGATAGAAACCCGGACCACTAGAAAAA
AGAAAACACTCTCATCTAGATTTAAACAATAAACATCGAGGTATACACTGCCTGTCAGCA
ATCATGGAATGTACGATGAGTAAAGAGCCACGACTGCTTCGTCACTTCCACACACACACA
TACACAAACCGAATTCAAAGGATCGGCACACTGCAAAAGCTAACTGCAATAATCCATGGC
CTCCGACCACCGACTCGGCGCGCTCAGGGCGTTCGACGACACCAAGGCCGGCGTCAAGGG
CCTCGTCGACGCGGGAACCACGGCCGTCCCCGCCATTTTCCACCACGCGCCCGAATCCCT
CAACGACGCGCCCCATCACCATGACCACCAGTTCGCCATCCCG

Homology of Contig U35_43955 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None