barSeed - Barley Seed Development Database

Probe CUST_8785_PI390587928

Source Contig U35_43981

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8785_PI390587928	Hv_44K_v2	CATGAGTTGGGCGTGTAAAATGTGCATCGCTCGAGCGTGTTTGGTTGCCTTCTCAAAAAA	321	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.331	5.983	1.167	0.697	0.377	0.561
Raw	82.003	187.192	29.370	29.806	4.300	8.713

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26035.1	778	7e-23	85 - 141	100	57 / 57	minus	ABC13949 ABC41354
JLOC1	JLOC1_17707.1	698	4e-23	61 - 117	100	57 / 57	minus
Harvest21	ABC41354	392	3e-25	322 - 381	100	60 / 60	plus	ABC41354
Harvest35	U35_43981	392	3e-25	322 - 381	100	60 / 60	plus

Contig Sequence (392 bp)

>U35_43981 392 Hv_44K_v2
TCACCGGGCTCCTCTGGTCCTACGCGTGCCGGGGGTCGGCGGTGGGCGGCGCCGACGACC
CGAGGATGAACCCGCTGGCGCCCGGCGCGTCGCCGGCGCTGGAGAGGCTCGGGTGCGCGA
GGATGCTGGTGACCACGGGGCTCGAGGACGGGCTCGCGGCGCGCAACCGCGCGTACTACG
ACGCCGTGGCTGCGAGCGGGTGGCGCGGGAGCGCGGCGTGGCTGGAGCTGGAGGGGGAGG
GCCACGTGTTCTTCCTTGGGAAGCTCGAGTGCGACAACGCCAAGCGGCTTATGGATCGCG
TTGTGGCGTTCATAGCCGAGGCATGAGTTGGGCGTGTAAAATGTGCATCGCTCGAGCGTG
TTTGGTTGCCTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_43981 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g32300.1	407	2e-53
Arabidopsis v10	None