- Probe CUST_8704_PI390587928
- Source Contig U35_14325
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8704_PI390587928 | Hv_44K_v2 | TTTGGGCAGCTGTAGTGAGTAGGGATCTTCGGAATAACAATATACTATTCTTATTTTTCA | 464 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.013 | 3.003 | 1.492 | 0.440 | 0.022 | 0.015 |
| Raw | 848.126 | 2089.735 | 858.421 | 410.519 | 5.792 | 3.809 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC01502 | 539 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus | ABC01502 |
| Harvest21 | ABC01501 | 489 | 6e-22 | 423 - 482 | 97 | 58 / 60 | plus | ABC01501 |
| Harvest35 | U35_14325 | 539 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus |
Contig Sequence (539 bp)
>U35_14325 539 Hv_44K_v2 TTATATGAGTGTGTAAAAATCATCTTGTAGATCTCTTGAAACAAGTGTCCCAATAGCGTC GTATTATCAAGATGGACAAGTACCCAACTCCCATCCGTGCAAGAGTCCTACTGCAAGCTC TACTTCTTCTTCTCATATGTCATGCTACTACTACACAATGTCGAATCATCAATGGCATCG ATAAGGATAAGATCAATTTACATGGGTTGTGTGTCATAGACAAACCAGTCCTTGGTGACT ACTGTTGCAAAGTTACGCATGAGTGTTACATAGACCTTCCGACGTGCCTTCAGGAGTGCA ACAAACCTGCAGGCGTGGTGGCGAAGGCAGCCCCTCCTTCACCTACCGTATTCAGGACAA ATGGAATTTGATTGGATAACAATATGCGATGTATGAAAAATATTTGAAATAAAAAGAAGT ATCTCTGTTTTTGTTAAAAAAAAAAAAAAAAATTGCAATTTAATTTTGGGCAGCTGTAGT GAGTAGGGATCTTCGGAATAACAATATACTATTCTTATTTTTCAAAAAAAAAAAAAAAA
Homology of Contig U35_14325 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |