barSeed - Barley Seed Development Database

Probe CUST_8689_PI390587928

Source Contig U35_14332

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8689_PI390587928	Hv_44K_v2	GGTGCGAATTGTGTTATTATATTAGCGTAACTGTGGAACTTAATACCAGTAAATTTGGGA	1643	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248169.1	1707	2e-24	1619 - 1678	100	60 / 60	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
MLOC	MLOC_37707.2	1387	2e-24	935 - 994	100	60 / 60	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
JLOC1	JLOC1_24445.1	1392	8e-25	1177 - 1236	100	60 / 60	plus
Harvest21	ABC31756	614	3e-25	47 - 106	100	60 / 60	minus
Harvest21	ABC01503	1868	3e-25	1777 - 1836	100	60 / 60	plus	ABC01503
Harvest35	U35_36627	614	3e-25	47 - 106	100	60 / 60	minus
Harvest35	U35_14332	1735	3e-25	1644 - 1703	100	60 / 60	plus

Contig Sequence (1735 bp)

>U35_14332 1735 Hv_44K_v2
CGCTCACCCACGCTCCCCACTCCCCACAGATCCATCCGCGCCTCGACTCCCCCCTCCCCC
TCCCTCACTCCTCCCCTCCAAAACCTCGCCGGAACCCTACCCCTTCCCCGCCGCCGCCAT
GAGGGAAATCCTGCACATCCAGGGCGGCCAGTGCGGCAACCAGATCGGGGCCAAGTTCTG
GGAGGTGATATGCGACGAGCACGGCATCGACCAGACCGGCAAGTACGCCGGCGACTCCGA
CCTCCAGCTCGAGCGCATCAACGTCTACTACAACGAGGCCAGCGGCGGCCGCTTCGTGCC
CCGCGCCGTCCTCATGGACCTCGAGCCGGGCACCATGGACTCGCTCCGCTCCGGCCCCTA
CGGCCAGATCTTCCGCCCCGATAACTTCGTCTTCGGCCAGTCCGGCGCCGGCAACAACTG
GGCCAAGGGCCACTACACCGAGGGCGCCGAGCTCATCGACTCCGTCCTCGACGTTGTCCG
CAAGGAGGCAGAGAACTGCGACTGCCTGCAAGGATTTCAAGTCTGTCACTCTCTGGGAGG
AGGAACTGGTTCTGGTATGGGTACACTGCTCATCTCCAAGATCAGGGAGGAGTACCCTGA
TAGGATGATGTTGACATTCTCTGTTTTCCCATCGCCAAAGGTGTCTGACACTGTGGTCGA
ACCTTACAACGCTACACTCTCAGTACACCAACTTGTTGAGAATGCCGATGAGTGCATGGT
GCTCGACAATGAGGCTCTCTATGACATCTGCTTCCGCACCCTGAAGCTTGCCACACCCAC
ATTTGGTGATCTAAACCATCTTATTTCTGCAACAATGAGTGGTGTCACTTGCTGCCTCCG
CTTCCCCGGCCAGCTGAACTCTGACCTCCGGAAGCTCGCAGTCAACTTGATCCCATTCCC
TCGCCTCCATTTCTTCATGGTTGGCTTTGCACCACTGACCTCAAGGGGTTCTCAACAGTA
TCGCGCCCTCACTGTTCCTGAGTTGACCCAGCAGATGTGGGACTCAAAGAACATGATGTG
TGCTGCTGACCCGCGCCACGGTCGGTACCTCACAGCCTCTGCCATGTTCCGTGGTAAGAT
GAGCACAAAGGAGGTGGACGAGCAGATGCTGAACGTCCAGAACAAGAACTCGTCCTACTT
CGTTGAGTGGATACCCAACAATGTCAAGTCAAGCGTGTGTGACATCCCTCCCACAGGCCT
GTCAATGTCGTCCACCTTTGTTGGCAACTCCACCTCCATCCAGGAGATGTTCCGCCGTGT
GAGCGAGCAGTTCACGGCCATGTTCAGGAGGAAGGCTTTCTTGCACTGGTACACCGGGGA
GGGCATGGACGAGATGGAGTTCACCGAGGCCGAAAGCAACATGAACGATCTGGTTGCTGA
GTACCAGCAGTACCAGGATGCCACAGCCGACGAGGAGGAAGAGTACGAGGAGGAGGAGGA
TGATGAGGTTGCTGCCTAAGCCACCTGACCTTGTTCCGTCGTCGTGCGGTCTGGTAGATG
TGCCTTGTGTTTACTATTGCTGTCGATTTGGGGGTGCTTGTGGTGCGGATAGATCTTTAG
GTGGTCGATAACACTTATAGATGCTTTTGGTGCTTCGGCGAATCGATTTTTTTAAACTGT
TTTTTGTATGTCGATGGTGCTTTGGTGCGAATTGTGTTATTATATTAGCGTAACTGTGGA
ACTTAATACCAGTAAATTTGGGAATATTATATTTTGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g46000.1	447	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g05010.1	446
Arabidopsis v10	AT5G62700.1	450	\| Symbols: TUB3 \| tubulin beta chain 3 \| chr5:25184501-25186426 FORWARD LENGTH=450