barSeed - Barley Seed Development Database

Probe CUST_8687_PI390587928

Source Contig U35_14334

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8687_PI390587928	Hv_44K_v2	GTCATCCAAGTTGCCAAACAAAATTTTCTCACCTTGGAATGCATTTGAACTGGAGTCAAA	1734	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60495.1	1354	6e-24	148 - 206	100	59 / 59	minus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
JLOC1	JLOC1_39455.1	1664	3e-24	1451 - 1509	100	59 / 59	plus
Harvest35	U35_14334	1808	3e-25	1735 - 1794	100	60 / 60	plus

Contig Sequence (1808 bp)

>U35_14334 1808 Hv_44K_v2
CCCATCTCCGTTCCTAAACCCCCACCCCCCCTCGCCGGAACCCTAACCCTAGCCCCGCCG
CCGCCCCCCCTCGCGCCGCCGCCATGAGGGAGATCCTCCACATCCAGGGCGGCCAGTGCG
GCAACCAGATCGGGGCCAAGTTCTGGGAGGTGATCTGCGACGAGCACGGCATCGACCAGA
CCGGCAAGTACGCGGGCGACTCCGACCTCCAGCTCGAGCGCATCAACGTCTACTACAACG
AGGCCAGCGGCGGCCGCTACGTGCCCCGCGCCGTGCTCATGGACCTCGAGCCCGGCACCA
TGGACTCGCTGCGCTCCGGGCCCTACGGCCAGATCTTCCGCCCAGACAACTTCGTCTTCG
GCCAGTCCGGCGCCGGCAACAACTGGGCCAAGGGCCACTACACCGAGGGCGCAGAGCTCA
TCGACTCCGTCCTCGACGTTGTCCGCAAGGAAGCCGAGAACTGCGACTGCCTCCAGGGAT
TTCAGGTCTGCCACTCGCTGGGAGGAGGAACTGGATCCGGAATGGGTACCCTGCTCATCT
CCAAGATCAGGGAGGAGTACCCGGACCGCATGATGATGACATTCTCTGTGTTCCCGTCGC
CCAAGGTGTCTGATACGGTCGTTGAACCATACAATGCTACCCTCTCTGTGCACCAGCTTG
TTGAGAACGCGGATGAGTGCATGGTTCTTGACAATGAGGCTCTCTACGACATCTGCTTCC
GCACTTTGAAGCTTACCACTCCCACCTTTGGTGATCTGAACCACCTTATCTCTGCAACCA
TGAGTGGTGTTACCTGCTGCCTTCGTTTCCCGGGTCAGCTCAATTCTGACCTCCGGAAGC
TTGCTGTGAACCTGATCCCATTTCCACGGCTGCACTTCTTCATGGTTGGATTTGCTCCGC
TGACCTCGCGGGGTTCACAGATGTACCGTGCTCTCACTGTGCCTGAGCTAACCCAGCAGA
TGTGGGACTCAAAGAACATGATGTGCGCCGCTGACCCAAGGCATGGCCGCTACCTCACTG
CCTCGGCCATGTTCCGTGGGAAGATGAGTACCAAGGAAGTGGATGAGCAGATGCTGAACG
TCCAGAACAAGAATTCATCCTACTTCGTGGAGTGGATCCCCAACAATGTCAAGTCAAGCG
TGTGTGACATCCCGCCCACGGGCCTGAAGATGTCGTCCACGTTCGTCGGCAACTCCACGT
CGATCCAGGAGATGTTCCGCCGCGTGAGCGAGCAGTTCACCGCCATGTTCAGGAGGAAGG
CCTTCTTGCACTGGTACACAGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGA
GCAACATGAATGACTTGGTGGCCGAGTACCAGCAGTACCAGGACGCGACAGTCGAGGAGG
AAGAGGACTATGAGGATGAGCAGGAGGACGAGGAGGCCGTCTGAGGCGCGTCTCCTCCCG
TTCTTCCCATTGATATGCCTTATATCGCTCGCTAAGTTGGTGGAGTGCTCGTGGTGCTGT
CAGGTGGTGATAGCTAGATGCTATTCTTTTACCCGTTCTAAACGTCGGTCGTGTTGCCTT
GTCAGACTTATTTTTTCGTTATGTGGACTTGTGGTGGTGGTCTGCTCATGTCGTGATGAG
CATTGGTGTAAGGTTTGACTGATGACTGCTTGGTGTGTTATTCAGTAGTGCTACTAGTCT
CAAATCTAAAAAAAAAAAAAAGTATTTTTAGGCCAAGTTGCCAAACATGCTTCTGTCATC
CAAGTTGCCAAACAAAATTTTCTCACCTTGGAATGCATTTGAACTGGAGTCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_14334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g46000.1	447	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g05010.1	446
Arabidopsis v10	AT5G62700.1	450	\| Symbols: TUB3 \| tubulin beta chain 3 \| chr5:25184501-25186426 FORWARD LENGTH=450