barSeed - Barley Seed Development Database

Probe CUST_8685_PI390587928

Source Contig U35_14336

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8685_PI390587928	Hv_44K_v2	TAGTCAGTTTGTTGGCGGTGAACTTGAATATCTAGCAGGTTTGTAATATGGCTCGTTCTG	1597	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251033.1	1699	2e-24	1615 - 1674	100	60 / 60	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC	MLOC_58767.1	820	2e-24	149 - 208	100	60 / 60	minus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
JLOC1	JLOC1_38207.1	1846	8e-25	1175 - 1234	100	60 / 60	minus
Harvest21	ABC01512	1702	3e-25	1598 - 1657	100	60 / 60	plus	ABC01512
Harvest35	U35_14336	1700	3e-25	1598 - 1657	100	60 / 60	plus

Contig Sequence (1700 bp)

>U35_14336 1700 Hv_44K_v2
TCCCAGCCTCGCCTCGCCGCCACACTCCCCACTCCCACTGCGCTGCTCCGTCGAGCCAGC
TCGCTGATCAGAGAAGATGAGGGAGATCCTCCACATTCAGGGTGGTCAATGTGGAAACCA
GATTGGTTCCAAGTTCTGGGAGGTGGTTTGTGACGAGCATGGCATCGACCCCACTGGGCG
GTATGTCGGCACCTCTGACCTGCAGCTGGAGCGTGTCAATGTCTACTATAATGAGGCCTC
ATGCGGCCGCTTTGTGCCCCGGGCTGTTCTTATGGATCTGGAGCCTGGTACTATGGACAG
TGTTCGTACTGGACCATACGGGCAGATCTTCCGCCCTGACAACTTCGTGTTTGGGCAGTC
TGGTGCTGGTAACAATTGGGCCAAGGGTCATTACACCGAGGGTGCAGAGCTCATTGACTC
TGTTCTTGACGTTGTCAGGAAGGAGGCTGAGAACTGTGACTGCCTTCAAGGTTTCCAAGT
ATGCCACTCTCTTGGTGGTGGTACTGGATCAGGCATGGGGACACTTTTGATATCAAAGAT
CAGGGAGGAGTACCCAGACCGCATGATGTTAACATTCTCTGTTTTCCCTTCACCGAAAGT
ATCTGATACTGTGGTTGAGCCTTACAATGCCACTCTTTCGGTCCATCAGTTGGTTGAGAA
TGCAGATGAGTGCATGGTTCTTGACAACGAGGCCCTTTATGACATCTGTTTCAGGACTCT
TAAGCTGACCACTCCCAGCTTTGGAGATTTGAACCATTTGATCTCTGCCACCATGAGTGG
AGTGACCTGCTGCCTGAGGTTCCCTGGCCAGCTGAACTCCGACCTCCGGAAGCTGGCAGT
GAACCTGATCCCCTTCCCACGTCTCCACTTCTTCATGGTTGGGTTCGCGCCCCTGACCTC
CCGCGGCTCCCAGATGTACCGCTCCCTCACCGTCCCGGAGCTCACCCAGCAAATGTGGGA
CTCCAAGAACATGATGTGCGCCGCGGACCCCCGCCACGGCCGCTACCTCACTGCCTCGGC
CATGTTCCGTGGCAAGATGAGCACCAAGGAGGTGGACGAGCAGATGATCAACGTGCAGAA
CAAGAACTCATCCTACTTCGTGGAGTGGATCCCCAACAACGTCAAGTCGAGCGTGTGCGA
CATCGCGCCGAGGGGCCTGTCCATGGCGTCCACCTTCATCGGCAACTCCACGTCCATCCA
GGAGATGTTCCGGCGTGTGAGCGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCCTTCCT
TCACTGGTACACGGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACAT
GAACGACCTCGTCGCCGAGTACCAGCAGTACCAGGACGCCACCGCCGACGAGGAGGAGGA
ACTGTACGAGGACGAGGACGACGCCGACCTTCAGGAGTAGGGAGGGGCGAGGTCTGTTCT
TGGTCGTCGTGCTCAGGGTCAGGGGGCTATTTCTGATGGCTCCCTGTCGCTGCTAGTAGT
TTGTATGTTGCGGTTTGGGTGTGACGGGGCTGCCCCCATCTTCGGGGAGTCGTGGACTTG
TTGCTTGTGTAGTTTGCATTTGTCAGAGTTAATTTGGTAGTCAGTTTGTTGGCGGTGAAC
TTGAATATCTAGCAGGTTTGTAATATGGCTCGTTCTGAATCCCAAGGAATGTTTGCTGTT
AAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g18050.1	448	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g21340.1	448
Arabidopsis v10	AT5G12250.1	449	\| Symbols: TUB6 \| beta-6 tubulin \| chr5:3961317-3962971 REVERSE LENGTH=449