barSeed - Barley Seed Development Database

Probe CUST_8578_PI390587928

Source Contig U35_24498

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8578_PI390587928	Hv_44K_v2	CTTGAGAAACTGAGGCCATTTGTGTGCTGTGTTTTGCCTGTATTTTCCAGGCTTAGTTCA	425	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73595.1	3632	2e-24	963 - 1022	100	60 / 60	plus	ABC05087 ABC20776
JLOC1	JLOC1_49000.1	1683	8e-25	1127 - 1186	100	60 / 60	minus
JLOC1	JLOC1_48999.1	1538	8e-25	848 - 907	100	60 / 60	plus
Harvest21	ABC20776	536	3e-25	52 - 111	100	60 / 60	minus	ABC20776
Harvest35	U35_24498	536	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_24498 536 Hv_44K_v2
GCATTTCCGCNCCGAGCAGCGATGCCGGGAGCATGAGCCGCCGCATGCTCAGCGACCGGC
TGCATTACCAGGAGCAGGGCAGCCCGATCCGGCCCGATTCGCAGCAGCGTGTCGGCGGCG
GGGTGAACCGCTCCCTTGAGACCACCCTGAGGAGCGCCTGGGATGCTGATGTGCAGGGCC
TGTCTAACAGGTTCTGGTACCCTTCAGCAGCTGCAGACAGCAGCAGCCAACAGCCAAGAT
GATGAAATGTGACCCAGCTCTTTGCATCTGTGTGACTGGTACTCTGTTTATAGCACTGGA
ATAGATGGTATAGCATAGCAATAGGGGTTTACATTATGATGATGAGCCATTGTTTAGCTC
TTGTTTGTGAGCATGAACTGATACAAGTGTGGTGACATACAAGCAGTTGTTTCACAGTTT
CACTGCTTGAGAAACTGAGGCCATTTGTGTGCTGTGTTTTGCCTGTATTTTCCAGGCTTA
GTTCAGCCTATGCTCAAGCACACATCAGGTGCATTTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None