barSeed - Barley Seed Development Database

Probe CUST_8519_PI390587928

Source Contig U35_48477

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8519_PI390587928	Hv_44K_v2	TGTCAAGCTCTGGAAGTGATATCAGATAAACACATGACGAGGGCAGCTCATGAAAATGTC	173	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5803.3	1159	2e-24	96 - 155	100	60 / 60	minus	ABC15448 ABC22799
MLOC	MLOC_5803.1	2118	2e-24	399 - 458	100	60 / 60	minus	ABC15448 ABC22799
JLOC1	JLOC1_3756.2	2229	8e-25	1786 - 1845	100	60 / 60	plus
Harvest21	ABC15448	1783	3e-25	1551 - 1610	100	60 / 60	plus	ABC15448
Harvest35	U35_48477	589	3e-25	174 - 233	100	60 / 60	minus

Contig Sequence (589 bp)

>U35_48477 589 Hv_44K_v2
AATACATAAAGGCTTCTGTGCTTGTGACCAGTCAATGATAACAACACTCTAGAGTTTGCG
CAGGCCACTACAAGTATGGTACATTCTACAAGGATAGTTAGACCTATCCAAGGGCACCTG
CAGCAACTGGGATGACATCAAATTGGGTTAGTTCTTGAACACAGATAGCTGAAGACATTT
TCATGAGCTGCCCTCGTCATGTGTTTATCTGATATCACTTCCAGAGCTTGACAAGCTTAT
CATGACTTACTGAGGCGACCAACCCTGATGCATTTGATGCAGCTAGGGCTGCAATTAAGC
CGTCATGGGCGTTGCTGATGGTCACCGTATTCTTCTCCCTTATGTCCCAAAGTTCCAAGG
ACTCGTAACAACCAATTACAAGCAATGATGGATAATTCGGGTGAAAAACACAAGAATTGA
ACTTGTTTCCACTGCAATTCAACTCATTCACACGGTCGCCGTCATTTCCTGAAGTAAATG
ACCACACCTTGACAGAATCTTCACTTACAGAGGCCAGATAGTCACCCGCAGCATCCCAAC
AAATCGACTGGATGTTCTTTATGTGTCCCTGTAAGGCATTCCTACACAC

Homology of Contig U35_48477 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42260.2	876	6e-62	protein\|transcriptional corepressor LEUNIG, putative, expressed
Brachypodium v1_2	Bradi2g43087.1	911	5e-73
Arabidopsis v10	None