barSeed - Barley Seed Development Database

Probe ABC22799

Source Contig ABC22799

barSeed

Links

Affymetrix Source Sequence (659 bp)

>ABC22799 659
CCATCATTGCTTGTAATTGGTTGTTACGAGTCCTTGGAACTTTGGGACATAAGGGAGAAG
AATACGGTGACCATCAGCAACGCCCATGACGGCTTAATTGCAGCCCTAGCTGCATCAAAT
GCATCAGGGTTGGTCGCCTCAGTAAGTCATGATAAGCTTGTCAAGCTCTGGAAGTGATAT
CAGGTAGCAACCTTCCTTCTACGTCAAACAAGTTGGTCCTTGCGGACATCTGTCGTCCAG
TTCCAGCCAACGTTTTATGATGTAGAAACAGGGCGTTTTTCTGCTGCAGATAAACACATG
ACGAGGGCAGCTCATGAAAATGTCTTCAGCTATCTGTGTTCAAGAACTAACCCAATTTGA
TGTCATCCCAGTTGCTGCAGGTGCCCTTGGATAGGTCTAACTATCCTTGTAGAATGTACC
ATACTTGTAGTGGCCTGCGCAAACTCTAGAGTGTTGTTATCATTGACTGGTCACAAGCAC
AGAAGCCTTTATGTATTTTCTGACTGCATTTTTCTCAATTGCGTTTGCTCTTATTTCCCC
TTTCTCTTTGTGTGCCCCCAAATTCTCCAAGTCAGATGTGTCCGCCTGTTGCCTAAAAGC
TTACGTGTAGTTCAGGTACTCCATTGATATGCTCTTCCTTCGTATTTTTTAGATGTGCC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK377138	3254	0.0	2742 - 3254	100	513 / 513	CUST_22855_PI390587928 CUST_1098_PI390587928	ABC15448 ABC22799
MLOC_5803.2	2007	0.0	1 - 482	100	482 / 482	None	ABC15448 ABC22799
MLOC_5803.4	1993	0.0	1 - 368	100	368 / 368	None	ABC15448 ABC22799
MLOC_5803.1	2118	5e-90	434 - 613	100	180 / 180	CUST_1098_PI390587928 CUST_8519_PI390587928	ABC15448 ABC22799
MLOC_5803.5	1897	0.0	1 - 365	100	365 / 365	None	ABC15448 ABC22799
MLOC_5803.3	1159	7e-64	1 - 133	100	133 / 133	CUST_8519_PI390587928	ABC15448 ABC22799