barSeed - Barley Seed Development Database

Probe CUST_8474_PI390587928

Source Contig U35_8046

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8474_PI390587928	Hv_44K_v2	TAGATCTTCTAGAGTGTCCAAGGGCTCGGCTTAAGAAGCAATGCATAAGATATCTTGGTC	450	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.355	1.891	1.099	0.721	0.420	0.411
Raw	611.810	662.976	381.442	364.765	80.178	87.089

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37774.1	1559	2e-24	1121 - 1180	100	60 / 60	plus	ABC15197 ABC18490
MLOC	MLOC_37774.2	1777	2e-24	636 - 695	100	60 / 60	plus	ABC15197 ABC18490 ABC30030
MLOC	MLOC_37774.3	1934	2e-24	793 - 852	100	60 / 60	plus	ABC15197 ABC18490 ABC30030
JLOC1	JLOC1_24498.1	1916	8e-25	671 - 730	100	60 / 60	plus
Harvest21	ABC18490	524	3e-25	451 - 510	100	60 / 60	plus	ABC18490
Harvest35	U35_8046	525	3e-25	451 - 510	100	60 / 60	plus

Contig Sequence (525 bp)

>U35_8046 525 Hv_44K_v2
GCAAGCGCTGGACTTCGCGCGGCTCAACCACAGCACCGTCTCCTTCTACGACGACCCGGA
GCCGGAGACCGCCGCCTCGCGCTGGAACCGCGTCAGCCTCAACGCATCCAAGGTCCTCTT
GATACATTCCCTTCCCCTGCACCATCAGTCGCCGGCACAAGGCAGCAGCTCACCATGATG
GCCTTTTCCCCACAAGAAAGCCATTCTTTTTTTTTTACTGGAATTATCCTTAGATTCAAC
TCCACCTCATGTTCATGAGCATGTTGCAGGTGGGGCAGGGTTTATCCAAGGACGCCAAGG
CTCTCAAGCTGGCTTTCCAGCACTGGATCGAGGCTATTGATCCAAGGCACAGGTACGGGC
ATAACCTGCATTTCTACTATGATGTCTGGTGCCAGACCCAGGCTGGCCAGCCCTTCTTCT
ACTGGCTTGATATTGGTGAGGGAAAAGATGTAGATCTTCTAGAGTGTCCAAGGGCTCGGC
TTAAGAAGCAATGCATAAGATATCTTGGTCCACAAGAGCGTGAGT

Homology of Contig U35_8046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05420.1	478	5e-54	protein\|calmodulin-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g42560.1	470	8e-54
Arabidopsis v10	None