barSeed - Barley Seed Development Database

Probe CUST_842_PI390587928

Source Contig U35_10893

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_842_PI390587928	Hv_44K_v2	ATTGTTCTAGAATTTTTGAATTATAACTCAGATGTTGATTACTCATGGGTTCCGCACCCG	890	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249921.1	1876	2e-24	1612 - 1671	100	60 / 60	plus	ABC06761
MLOC	AK356418	2131	2e-24	1927 - 1986	100	60 / 60	plus	None
MLOC	MLOC_26356.1	2819	2e-24	1608 - 1667	100	60 / 60	plus	None
MLOC	MLOC_26356.3	1032	2e-24	839 - 898	100	60 / 60	plus	None
MLOC	MLOC_26356.2	2118	2e-24	907 - 966	100	60 / 60	plus	None
JLOC1	JLOC1_17901.3	1787	8e-25	728 - 787	100	60 / 60	plus
JLOC1	JLOC1_17901.2	2028	8e-25	969 - 1028	100	60 / 60	plus
Harvest21	ABC22604	950	3e-25	891 - 950	100	60 / 60	plus
Harvest35	U35_10893	950	3e-25	891 - 950	100	60 / 60	plus

Contig Sequence (950 bp)

>U35_10893 950 Hv_44K_v2
CCAGCGTCCTGACGCCGGAACCCGCCGCCCGACCACCTTCGCCGGCCGCCGGCGGGCAGG
TCGCGCCGCGGCCAGGAAGAGGCCAAGCTGCGGAGGTGCCAGGGAGACAGGCATCTCCAG
CCGGCCCTCCCCCTCCGAAGACTGCTCGAGCTCGTCGGCATCTAGCTCCTCAGCCCAGTC
CGCCCAGCGCCTCGCCGACAGGGGAAAGCGGAGGGAGGGCGCCGCCGACAGGGCTGGCGG
GGGCACAGGGTCCATGCGGCACGCTGGCCGGGCGCTGTAAGAGAGCCACTCAGGCCGTCA
GTCCTTCATGGCCGCCAGTCCGCCGCAGGGGGAGAGCGCCCTCAGTCGCATGCTGTCTCT
TCTACCGTCAACCCTGCCAACCCTTTNCTTTCAGTCTGCTAATGGTGGCAGTGTGCTTGT
GTATCAAATGTTCATATACCCACGCATCAATAAAATTCTTGGACCGATCAAATGTTGTCA
AATCGCAGCCGCTCTGTGCATACCTATTCTATTTGCCTATCCCTACATGACATACCTGTC
AGGACCTGCATTGTCAATCGTTCTGAGTATTGCATCAGTCTTAAAGAATAATATTGCTGT
TACCATCATTACAGGCCTCTTCATCCTTCAAAACAACGCTGTGTCTCAGGACCAAAGAGG
AGCAGCAAATGGGTTAGCCATGACTGGAATGTCCCTTTTCAAGGCAGTTGCTCCTGCAAG
CGCCGGCATTATGTTCTCGTGGGCGCAGAAACGCCAGCATACTTTCTTCTTTCCAGGTGA
TCATATGGTGTTCTTTGTGCTGAACATGATAGAGCTCATTGGACTTGTCCTCACATTCAA
ACCCTTCCTCGCCGTGCCAGAGCAGTATGCCAGAAACTAGCTTTACAATTATTGTTCTAG
AATTTTTGAATTATAACTCAGATGTTGATTACTCATGGGTTCCGCACCCG

Homology of Contig U35_10893 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03899.4	426	6e-81	protein\|major facilitator superfamily antiporter, putative, expressed
Brachypodium v1_2	Bradi4g26366.2	492	2e-84
Arabidopsis v10	None