barSeed - Barley Seed Development Database

Probe CUST_8427_PI390587928

Source Contig U35_8093

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8427_PI390587928	Hv_44K_v2	TTTCGCCGTCGTCGACCTCAACAACATGCGTACGGTGACGGTCGATGCCAAGGCCAGCAC	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375117	1776	2e-24	425 - 484	100	60 / 60	plus	ABC12855 ABC48290 ABC52603
MLOC	MLOC_5721.1	377	2e-24	282 - 341	100	60 / 60	minus	None
JLOC1	JLOC1_3693.1	378	8e-25	283 - 342	100	60 / 60	minus
Harvest21	ABC17708	848	3e-25	386 - 445	100	60 / 60	plus
Harvest35	U35_8093	544	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_8093 544 Hv_44K_v2
GCTCTCGATCGGCTACAATGGCGAGCTCGAGGGCCTTCGCTTTGGTGCTCCTCCTCTGTG
CCTTGTCCTGCCACCACGCCGCCGCCACCTACGCGCCGGTGCCCGCCAAGGAGGACTTCC
TCGGATGCCTCGTGAAGGAGATACCAGCCCGCCTCCTCTACGCCAAGAGCTCGCCCGCCT
ACCCCACCGTCCTGGCGCAGACCATCAGGAACTCCAGGTGGTCGACGCCGGAGAACGTGA
AGCCGCTCTACATCATCACCCCCACCAACGCTTCCCACATCCAGTCCGCGGTGGTGTGCG
GCCGTCGGCACGGCGTCCGCCTCCGCGTGCGGAGCGGCGGCCACGACTACGAGGGCCTGT
CGTACCGGTCCGAGAAACCCGAGACTTTCGCCGTCGTCGACCTCAACAACATGCGTACGG
TGACGGTCGATGCCAAGGCCAGCACGGCGTGGGTCGACTTCGGCGCGCAGCTCGGCGAGC
TCTACTACGCCATCTTCAAGAGCAGCCCCGTGCTCGGGTTCCCGGCCGGCGTTTGCCCGT
CCAT

Homology of Contig U35_8093 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35590.1	532	1e-64	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g38260.1	523	3e-82
Arabidopsis v10	None