barSeed - Barley Seed Development Database

Probe CUST_8426_PI390587928

Source Contig U35_8094

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8426_PI390587928	Hv_44K_v2	TTCCCAAGACAGTGAAAGAAGGCGCCGTAGACCTCATCAACAAGTGGCAAACGGTCGCGC	790	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375117	1776	2e-24	826 - 885	100	60 / 60	plus	ABC12855 ABC48290 ABC52603
MLOC	MLOC_81831.1	1035	2e-24	62 - 121	100	60 / 60	plus	ABC12855 ABC48290 ABC52603
JLOC1	JLOC1_54433.1	1075	8e-25	62 - 121	100	60 / 60	plus
Harvest21	ABC17708	848	3e-25	787 - 846	100	60 / 60	plus
Harvest35	U35_8094	852	3e-25	791 - 850	100	60 / 60	plus

Contig Sequence (852 bp)

>U35_8094 852 Hv_44K_v2
GCACAGCTCTCGATCGGCTACATGGCGAGCTCGAGGGCCTTCGCTCTGGTGCTCCTCCTC
TGCGCCTTGTCCTGCCACCACGCTGCCGTCTCCTCCGCGCAGGTGCCGGCCAAGGACGAC
TTCCTGGGATGCCTCGTGAAGGAGATACCGGCCCGCCTCCTCTTCGCCAAGAGCTCGCCT
GCCTTCCCCGCCGTCCTGGAGCAGACCATCAGGAACTCGCGGTGGTCGTCGCCGCAGAAC
GTGAAGCCGCTCTACATCATCACCCCCACCAACACCTCCCACATCCAGTCTGCTGTGGTG
TGCGGCCGCCGGCACGGCGTCCGCCTCCGCGTGCGGAGCGGCGGCCACGACTACGAGGGC
CTGTCGTACCGGTCCGAGCGCCCCGAGGCGTTCGCCGTCGTAGACCTCAACAAGATGCGG
ACCGTGTTGGTCAACGAAAAGGCCCGCACGGCGTGGGTGGACTCCGGCGCGCAGCTCGGC
GAGCTCTACTACGCCATCGCCAAGAACAGCCCCGTGCTCGCGTTCCCGGCCGGCGTTTGC
CCGTCCATAGGTGTAGGTGGCAACTTCGCGGGCGGCGGCTTCGGCATGCTGCTGCGCAAG
TACGGCATCGCCGCCGAGAACGTCATCGACGTCAAGGTGGTCGACGTCAACGGCACGCTG
CTAGACAAGAGCTCCATGAGCGCGGACCACTTCTGGGCTGTCAGAGGCGGCGGCGGAGAG
AGCTTCGGCATCGTCGTCTCGTGGCAGGTGAAGCTCGTGCCGGTGCCTCCTACCGTGACC
GTGTTCAAGATTCCCAAGACAGTGAAAGAAGGCGCCGTAGACCTCATCAACAAGTGGCAA
ACGGTCGCGCCG

Homology of Contig U35_8094 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35590.1	532	5e-97	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g38260.1	523	5e-119
Arabidopsis v10	AT5G44410.1	535	8e-64	FAD-binding Berberine family protein \| chr5:17891246-17892853 REVERSE LENGTH=535