barSeed - Barley Seed Development Database

Probe CUST_8346_PI390587928

Source Contig U35_20246

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8346_PI390587928	Hv_44K_v2	TGCATTTGCGTATCCGTACCCGCATCGTCACGTTTGCCATGGTATATTCACTTTAAAAAA	910	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.095	2.878	1.248	0.595	0.187	0.190
Raw	4034.853	5726.643	2210.760	1675.029	186.098	204.526

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13939	981	3e-25	911 - 970	100	60 / 60	plus	ABC13939
Harvest35	U35_20246	981	3e-25	911 - 970	100	60 / 60	plus

Contig Sequence (981 bp)

>U35_20246 981 Hv_44K_v2
GAGATCGCCAATGACGGCACAGTTCCATTCAGGCATGGAGAGCGCATTGGCTTCAGTTAC
CTAGTTTCACAGAAGTATACTGGTGAGAAGGCACGTGTCAAAGTTCTCCGGAGTTCAAAA
ATTCATGAATTCAACATAAAGCTATCAATCCACAAAAAGCTCATTCCAGCTCATATAAAG
GGCAGGCCACCGTCATACTACATTGTTGCAGGCTTTGTTTTTATGGTCGTATCTGTTCCA
TATCTTCGATCCGAGTATGGAAAAGATTACGAATTTGATGCCCCCGTCAAGTTGTTGGAC
AAGCATCTACATGCAATGGCGCAATCACCTGATGAGCAGCTTGTGGTGGTCTCACAGGTG
CTTGTGGCAGATATCAATATTGGTTATGAAGAAATTGTCAATACTCAGGTGCGTGCGTTC
AATGGGAAACCAGTAAATAATTTGAAGCAACTGGCGACAATGGTGGAAGATTGCAACAAG
GAGTTCTTGAAATTTGACATGGATTACGACCAGGTTGTTGTTCTCGAGACAAAAACAGCA
AGGGCTGCGACTCAGGACATTCTAACAACACACTGCATACCTTCAGCGATGTCAGATGAC
CTGAAGGCCTGAGTGAAAGCACGGTGTTGGCCGATGCCACTATATCCGGCCATCCTATTG
GCACGTACTTTGTGTTGGATTATACAACGCCAAGTGCACGAGCAACCCCTCTTCAGCAAT
GAGTGCTGCTGAAGTTTTGGACGTGGAAGAGCATTATAGTTGGGCAAAAAAGTTGAATGG
TGGCCAACATCGTATCCTCACTGTCTAGGTTAAAAAATGTGGCACCGAGCAACTGGGAAA
CCTGTAGAATAGCAGCAATCGAAGTTATGTTCTCATTTGATTTATTGAATCAATACCAGA
AAGGTACCCTTGCATTTGCGTATCCGTACCCGCATCGTCACGTTTGCCATGGTATATTCA
CTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12780.1	629	4e-122	protein\|OsDegp10 - Putative Deg protease homologue, expressed
Brachypodium v1_2	Bradi1g44937.2	269	6e-131
Arabidopsis v10	AT5G40200.1	592	2e-111	\| Symbols: DegP9 \| DegP protease 9 \| chr5:16070402-16073101 FORWARD LENGTH=592