barSeed - Barley Seed Development Database

Probe CUST_8278_PI390587928

Source Contig U35_46356

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8278_PI390587928	Hv_44K_v2	ACGTAGCAGCATAGGAGATCGATCGCCATTCGCCAAGATAGTACTGTATATTTTGTGACG	446	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.740	0.798	1.571	2.080	1.020	1.125
Raw	3.676	6.086	15.399	33.254	3.038	5.656

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68704.3	888	2e-24	200 - 259	100	60 / 60	plus	ABC08009
Harvest21	ABC46370	556	3e-25	447 - 506	100	60 / 60	plus
Harvest35	U35_46356	556	3e-25	447 - 506	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_46356 556 Hv_44K_v2
CGGGGGCAGCGGCACAAAGGGGGACGGGGGCGGGTGGCTCAACGCCAGGGCCACCTGGTA
CGGCGCTCCCGGCGGCGCCGGGCCTGACGACAATGGTGGCGCATGCGGGTTCAAGAACGT
GAACCTGCCGCCGTTCAACGCCATGACGTCGTGCGGCAATGAGCCGCTCTTCAAGGGGGG
GANGGATGCGGCTCGTGCTACCAGATAAGGTGCGTGGCTCACGCAACCTGCTCCGGCGTC
CCTGAGACGGTGATCATCACCGACATGAACTACTACCCGGTGTCCCGCTACCACTTCGAC
CTCAGCGGCACCGCCTTCGGCGCCATGGCCAAGGACGGCCAAAACGACGAGCTCCGCCAC
GCCGGCATCATCGACATGCAGTTCAAGAGGTCTCCTACTTTTTGGCACTCTGCTTTTGTT
ATTTTTGTTTGCTCCTGACAAGACATACGTAGCAGCATAGGAGATCGATCGCCATTCGCC
AAGATAGTACTGTATATTTTGTGACGCCGGCACTCATCCATTGCAGGGTGCCGTGCCAGT
ACCCGGGGTTGTCGGT

Homology of Contig U35_46356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None