barSeed - Barley Seed Development Database

Probe CUST_8227_PI390587928

Source Contig U35_5318

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8227_PI390587928	Hv_44K_v2	GCAGACCTCGGAGATGGCCAGGATGGCCAAGACGTACGGCAAGTTCTGGTGCACATGGCA	455	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365482	3977	2e-24	435 - 494	100	60 / 60	plus	ABC06446 ABC13970 ABC21005 ABC36750
MLOC	AK364711	2372	2e-24	1981 - 2040	100	60 / 60	plus	ABC06446 ABC08806 ABC08809 ABC10717 ABC36750
MLOC	AK354663	949	2e-24	467 - 526	100	60 / 60	plus	ABC06446 ABC36750
MLOC	MLOC_74164.1	1130	2e-24	449 - 508	100	60 / 60	minus	ABC36750
MLOC	MLOC_74164.2	909	2e-24	406 - 465	100	60 / 60	minus	ABC06446 ABC36750
JLOC1	JLOC1_49412.1	998	8e-25	492 - 551	100	60 / 60	plus
Harvest21	ABC11407	562	3e-25	456 - 515	100	60 / 60	plus
Harvest35	U35_5318	543	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (543 bp)

>U35_5318 543 Hv_44K_v2
CTGCAATCTGCCAACGCGCGAGAAGCGATGTCCTCTAGTGATCAGAACCCAGAGCCCACG
CCGGCATCGGGCACCGGTGGCGGTGGGACGGCGCCGCCGCCGCCGGGCAGGCCGACCACG
GTCTCCTCGCAGGCGATCGACATGGGAGCTCAGGTGCTGCAGCCCTTGAAGCCGGTGCGC
CAGATGAAGCAGCACGCGTGCAGCTTCGCGCTGTACGCGCATGACATGCACCGGCAGCTC
GAGGTCCACCACTTCGTCTCCCGCCTCAACCAGGACGTCCTCCAGTGCGCCGTCTACGAC
TCCGACAAGCCCTCGGCCCGCCTCATCGGCGTGGAGTACATCGTGTCGGACGACATCTTC
GAGGCGCTGCCGCCGGAGGAGCAGAAGCTGTGGCACTCGCACGCCTACGAGGTCAAGGCC
GGGCTGTGGACCGACGTGGGCGTGCCGGAGATGCTGCAGACCTCGGAGATGGCCAGGATG
GCCAAGACGTACGGCAAGTTCTGGTGCACATGGCAGGTGGACCGTGGCGACCGGCTGCCC
CTT

Homology of Contig U35_5318 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52830.1	251	5e-90	protein\|DUF1264 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g48790.1	257	2e-93
Arabidopsis v10	AT5G45690.1	247	1e-58	Protein of unknown function (DUF1264) \| chr5:18535139-18536259 REVERSE LENGTH=247