barSeed - Barley Seed Development Database

Probe ABC21005

Source Contig ABC21005

barSeed

Links

Affymetrix Source Sequence (689 bp)

>ABC21005 689
GCATCCACATTCCACAACTTCGGCTTCGCTCTGCATCCATCCATTCTCCAACGTACTGCC
GGTTCGTTAGTATAGTAGTCGACCCATCACAGTTCGTCCGTCCATGACGAAGTACCAGAG
GCCAGCAGCAGACCAGGCCGTGTCCCTCGCCCTCTCGCTCTCCCTCGGCGCCGTCGCCGA
CCGCAGCAGCAAGAAGATGCGCCGCGCCGGCGCCGTCGGTGGGGATCAGTTCGTGTGCAA
GACGTGCGGCCGCTCGTTCCCGACGTTCCAGGCGCTGGGTGGCCACCGGACCAGCCACCT
GCGCGGACGCCACGGGCTCGCGCTCGCCCTCACCACCGGCGATCACTACTACTCCGTCAA
GCCCAAGAGTACTACGGATCAGAAGCAGGAGCACCGGTGCAACATCTGCGGCCAAGAGTT
CGAGACTGGGCAGGCGCTCGGGGGACACATGCGCCGGCACCGTGACGAGGCGCCGCCCGT
TCTGCTCGAACTGTTTGTCTAGACTTATTTGGGTAGTTCTTCTAGTGCAGAGTTCCCGGC
ATGCGTATGCATGCACACTCGTAGACGTAGATGTTAGCCACTGGTTGGTTCATTCCTTTA
CATGTGTACATACTACATACATATAAGTATGATAACTTCTTCAGAGATTATATACACTTA
GTTCGTTCGTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250895.1	682	0.0	14 - 660	94	616 / 654	None	ABC21005
MLOC_76196.1	550	0.0	12 - 550	94	509 / 544	None	ABC21005
MLOC_10782.1	803	0.0	98 - 650	92	515 / 558	None	ABC21005
AK365482	3977	1e-176	1258 - 1710	92	418 / 456	CUST_24089_PI390587928 CUST_22109_PI390587928 CUST_8227_PI390587928	ABC06446 ABC13970 ABC21005 ABC36750
AK376680	745	3e-82	98 - 472	82	314 / 384	CUST_21339_PI390587928	ABC20981 ABC21005