barSeed - Barley Seed Development Database

Probe CUST_8196_PI390587928

Source Contig U35_5349

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8196_PI390587928	Hv_44K_v2	TCAACACCTTCCAAGAAATGAAGACTTACGCTCTGAATGTGGCATTGCTGTCCATCTTCG	61	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4786.1	2422	2e-24	893 - 952	100	60 / 60	plus	ABC11708
JLOC1	JLOC1_3029.1	2336	8e-25	761 - 820	100	60 / 60	plus
Harvest21	ABC11707	932	3e-25	62 - 121	100	60 / 60	plus
Harvest35	U35_5349	932	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (932 bp)

>U35_5349 932 Hv_44K_v2
GCCGTCTCCTCCATCGAGGCCATCGCCCTCCGCTCCCTCGGCTCATGGGAAGGCCATGAA
GTCAACACCTTCCAAGAAATGAAGACTTACGCTCTGAATGTGGCATTGCTGTCCATCTTC
GGGGAGGAGGAGATGCAGTACATCGAGGAGCTGAAGCAGTGCTACCTGACGCTGGAGAAG
GGGTACAACTCGATGCCGGTGAACCTGCCGGGCACGCTGTTCCACAAGGCCATGAAGGCC
CGGAAGCGGCTGGGCGCCATTGTGGCCCACATCATCTCAGCCCGGCGCGAGCGGGAGCGC
GGGAGCGACCTCCTGGGCTCCTTCATGGACGGCCGCGAGGCGCTCACCGACGACCAGATC
GCCGACAACGCCATCGGCGTCATCTTCGCCGCGCGGGACACCACCGCCAGCGTGCTCACG
TGGATGGTCAAGTTCCTCGGCGACAACCCCGCCGTCCTCAAAGCCGTCACCGAAGAGCAC
GCCGAGATCGCGAGGGAGAAGGCGTTGTCCGGCGAGCCGCTGTCGTGGGCCGACACGCGG
CGGATGCGGGTGACGGGCCGGGTGATCCAGGAGACGATGCGGGTGGCGTCCATCCTCTCC
TTCACCTTCAGAGAGGCCGTCGAGGACGTGGAGTACCAAGGGTACCTGATCCCCAAGGGC
TGGAAAGTGCTTCCCCTGTTCCGGAACATCCACCACAACCCCGACCACTTCCCCTCCCCC
GAAAAGTTCGATCCTTCACGATTCGAGGTGGCCCCCAAGCCCAACACGTTCATGCCGTTC
GGGAACGGGACCCACTCGTGCCCCGGCAACGAGCTGGCCAAGCTGGAGATGCTCGTCCTC
TGCCACCACCTCGCCACCAAGTACAGATGGTCTACCTCCAAGTCCGAGAGCGGCGTGCAG
TTCGGCCCCTTCGCCCTGCCCATCAACGGCCT

Homology of Contig U35_5349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47470.1	472	0.0	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g52660.1	480	0.0
Arabidopsis v10	AT5G45340.1	463	2e-154	\| Symbols: CYP707A3 \| cytochrome P450, family 707, subfamily A, polypeptide 3 \| chr5:18368977-18370909 REVERSE LENGTH=463