barSeed - Barley Seed Development Database

Probe CUST_8195_PI390587928

Source Contig U35_5350

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8195_PI390587928	Hv_44K_v2	AGCGACCCCTTTGTATTGTTTGTTACACGTCAATGCAACTGGAAATTGGCTTTCAAAAAA	1082	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.052	5.692	1.363	0.698	0.385	0.435
Raw	598.867	1026.982	206.592	166.300	33.084	39.837

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4786.3	910	3e-21	855 - 908	100	54 / 54	plus	ABC11708
MLOC	MLOC_4786.1	2422	3e-21	2345 - 2398	100	54 / 54	plus	ABC11708
JLOC1	JLOC1_3029.1	2336	2e-21	2213 - 2266	100	54 / 54	plus
Harvest21	ABC11708	1153	3e-25	12 - 71	100	60 / 60	minus	ABC11708
Harvest35	U35_5350	1153	3e-25	1083 - 1142	100	60 / 60	plus

Contig Sequence (1153 bp)

>U35_5350 1153 Hv_44K_v2
GGTGCTCCTAACCGAACGGACGAAATAGACCACAACTCGAACTCGCAACTCACCTCGGCT
CGGCTCGCTCCTCCGTGCAGGGTACCTGATCCCCAAGGGCTGGAAAGTGCTTCCCCTGTT
CCGGAACATCCACCACAACCCCGACCACTTCCCCTCCCCCGAAAAGTTCGATCCTTCACG
ATTCGAGGTCAGCATCATCACATCTTCTTCTTCTACTGTTTTTTTTATCCTTGGATGATG
ATGATGATGATGATGATAGGCTTGAGAGTCCCCCGTTGTTCATTAGCTGATTGCGTTTTT
GTTCTTGGTGACTGCAGGTGGCCCCCAAGCCCAACACGTTCATGCCGTTCGGGAACGGGA
CCCACTCGTGCCCCGGCAACGAGCTGGCCAAGCTGGAGATGCTCGTCCTCTGCCACCACC
TCGCCACCAAGTACAGATGGTCTACCTCCAAGTCCGAGAGCGGCGTGCAGTTCGGCCCCT
TCGCCCTGCCCATCAACGGCCTCCCCATGACCTTCACCCGCAAGGCCTGATCTATGTCTT
CCTCCTTCGGAAAATCAACACCACGATAGAGGCAACGGCGTGGCGCATGCGAACCGGATC
GGTTCTCCATCCGTCAGTGTCCGTGCCGGTCGCCGTCGGAGGGGACACTTGTAGCGGTGG
GCGCCGCGGCGGGAGCTGGCGATGGATCGGATCGGAGCACGGACCGTCAAAGTCCTTTGT
ACAGATTCTTCTTCAGCTAGGACCATGACGGCCGGGCGAGACAAGACCAGGAAAAATTCC
TGCCCTTCACAAACACACACCAGTCAGTGGTAGCACTACGTAGGCATTCTCAGCTAGGGA
GATCCGGCGCCACAAAGAAGTGGCGCCCAACTGTAAAACCAACCATTTTTTATCCTTTTC
TTTCAGTTTTTTTATTTTTAGTTTTTGGCAACACCTATAGGAGGAGAGAAGACAGCAGAC
TGACAGGCCCTGATTGGGATGTAAGATAGGTTGCCCGCCTGAAAGCAGGCTGGCAGCTAG
ATCGAATAATCAATCAATCCATCGATCGACCGCGGCAAGGGCCAAAAGGAGGCCCCCGGG
AGAGCGACCCCTTTGTATTGTTTGTTACACGTCAATGCAACTGGAAATTGGCTTTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_5350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None