barSeed - Barley Seed Development Database

Probe CUST_8180_PI390587928

Source Contig U35_2653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8180_PI390587928	Hv_44K_v2	TGCCTGCACGTGTTTCAAGTTTTGTTGTTGATTAACTTGGTAGTCATTGCTTCAATGATA	1215	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78465.2	1105	2e-24	930 - 989	100	60 / 60	plus	ABC04053 ABC07248 ABC07251 ABC46065
JLOC1	JLOC1_52297.4	2052	8e-25	1881 - 1940	100	60 / 60	plus
JLOC1	JLOC1_52297.3	2464	8e-25	2293 - 2352	100	60 / 60	plus
JLOC1	JLOC1_52297.2	1229	8e-25	1058 - 1117	100	60 / 60	plus
JLOC1	JLOC1_52297.1	1061	8e-25	890 - 949	100	60 / 60	plus
Harvest21	ABC07251	866	3e-25	745 - 804	100	60 / 60	plus	ABC07251
Harvest21	ABC46065	365	2e-22	65 - 122	98	57 / 58	minus	ABC46065
Harvest35	U35_2653	1370	3e-25	1216 - 1275	100	60 / 60	plus

Contig Sequence (1370 bp)

>U35_2653 1370 Hv_44K_v2
CAGGGCAAGCCCACACCCGGGCGCCTCTATGCCGAAACCCTAGCAAGTTACTGCAGCCGC
CTCCATCTCTCCCAATCATCCCGTCCAATCCCAATCCACATGTTCCAGCCACCACCATCC
CCACTTCGGCGCCTTCTCATGCCACCTCGACGCCGGTGAGGCATCCGTCCTGGCGCGCAC
CCAAACGGGGTGGCGGCAGATCTACATCGATGGTGTGGTTTGCATCCGGTCATCAGGAGA
GGCGAGGAGACGCCGATCCAGAAGGCAGGCCATGGCGGCGGCTAGATCCATGCCGAGACA
GGATCTGCATCTGGAGACCCATAGCATGGAGGGAGAAGACCCACGCCATGGAGTTGTTCG
TCAAGGAGCTCCTATGAGAGCAGTTTGCGGTCGGAGGGCCCGGTCGGCCGGCGATGGATG
CCGGCGACGGAGGTCTCCTCTCCACGGATCTGTGATGGAGCGCGTGCTTATTTTCCTCTC
CACGGATCAAGGCATATCCACTGGATCCATGCGGTGTTGGAGGAGATGATGCGGTTCGTG
TACTCCCTTCTGTGTGTATGTGTAGTTGGTGCAATAGCTAGAGTGGCCAGAGGAGGTGGA
GGAGCTGGCCAGCACCCATCGCCTGGACATAAGCGTCGCCGCTCCTCCTGTGTCTGGGCT
GGACGGTAGCTGCCGGCCGGAGGGTTGCGCACTTCTTCGGCACACACACACAATGGTCGA
CTGGCTTCGCCAAGGTACGTTCATGTGCGCTGGCACAGGCCGAGCTTGCATGGAATGACG
ACCCGCCGCACGCCCTGTATTGATCAGCTACCAGTGGAGCCGGATGTGGTCGCCTACTTT
GTCGCACAACTCCTTTGACCATCACGTACAACCCAACCTGGGTGCTGCAGGAGAGGAGAT
CAGATGTATGGAAACAAAAGAAAAGGCTGCAAGTCATGGTTGTTTATACGAGAGGAGATG
GTGGACCTGCAGACACCTTTGATTTCGTTAAATCCTGTGGAGGGAAGGGGAGATTATGGA
TGGATGGAGCTTGGTTGAAATTGGGTTGCTGTTGCATTGGCATTTAAGACTCAAGAGAAT
GTTCCTTCCCAAAGAAGAGGTCGGGCGTTCTCGTTGGCGACTCTAGCGGTTGAATTCATC
AGCTTATCTAGATTAGCTAGTGTTGGTGTTGCTATTTATGGATTTGTGGTGAAGAGGAAC
AACCATCCTGGTTGCTGCCTGCACGTGTTTCAAGTTTTGTTGTTGATTAACTTGGTAGTC
ATTGCTTCAATGATATCTTTATCAAGTTAATTTATGAACATACATGTATTTCTTCCAAAT
CTTCATATGTGAAAATTTTCATGTCTGTTGCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None