barSeed - Barley Seed Development Database

Probe CUST_8154_PI390587928

Source Contig U35_2680

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8154_PI390587928	Hv_44K_v2	AAGAGAAAGAGGAGAAAGTTTGTGGATGTATGCATTTCCTCTCTTCTGTTGACCAAAAAA	2000	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365058	2077	9e-22	2023 - 2077	100	55 / 55	plus	ABC07135 ABC11168 ABC15997
MLOC	MLOC_37356.2	1897	3e-21	1844 - 1897	100	54 / 54	plus	ABC07135 ABC11168 ABC15997
JLOC1	JLOC1_24184.2	3355	5e-22	2231 - 2285	100	55 / 55	plus
JLOC1	JLOC1_24184.1	2968	5e-22	1844 - 1898	100	55 / 55	plus
Harvest21	ABC07135	2069	3e-25	1999 - 2058	100	60 / 60	plus	ABC07135
Harvest35	U35_2680	2071	3e-25	2001 - 2060	100	60 / 60	plus

Contig Sequence (2071 bp)

>U35_2680 2071 Hv_44K_v2
GCGACACACAGACGCGCACGCCGCCCACCATTTTCTTGATTTGGCCCGTTCCCCTCCCTG
CTCTGCTCTGCTCTGCCGGCAGATCTCCTCCGGTCGGCCCCGCTGTCTTTTTTCCTGATT
CCGGAAGATGGGCAACTGCTGCGCGACGCCGCCGGCGGTGGACGGCGGCGGCGCCGGGAA
GCAGCAGCAGCAGCACAAGGAGCCGAAGCAGAGGAAGGGCAAGAAGCCCAACCCTTTCTC
GATCGAGTACAACCGGTCGGCGCCGCCGGGGGCCTCCAGGCTGGTGGTGCTGCGGGACCC
CACGGGGACCGGGCGGGACATCGCCGAGCGGTACGAGCTCGGCGGGGAGCTCGGCCGCGG
GGAGTTCGGGGTCACCTACCTCTGCACCGACCGGGACACCCGGGAGGCCCTCGCCTGCAA
GTCCATCTCCAAGAAGAAGCTCCGCACCGCGGTGGACATCGAGGACGTGCGCCGCGAGGT
GGAGATCATGCGCCACCTCCCCAAGCACCCCAACATCGTCACCCTCAGGGACACGTACGA
GGACGACAATGCCGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGGGAGCTCTTCGACCG
GATCGTCGCCAGGGGACACTACACGGAGCGCGCAGCCGCTGTCGTCACCAAGACCATCGT
CGAGGTCGTGCAGATGTGCCATAAGCATGGAGTGATGCACCGGGACCTCAAACCAGAGAA
TTTCTTGTTTGCAAACAAGAAAGAAACCGCTGCACTGAAAGCAATTGATTTTGGCCTGTC
TGTTTTTTTCACTCCAGGCGAACGGTTCACTGAGATTGTTGGAAGTCCTTATTACATGGC
TCCAGAGGTGTTAAAGAGAAACTATGGCCAAGAGGTTGATGTTTGGAGTGCAGGAGTGAT
TCTTTACATTCTTCTTTGTGGTGTCCCTCCATTCTGGGCAGAAACTGAACAAGGTGTTGC
TCAAGCAATTATCCGGTCTGTCATTGACTTTAAAAGAGATCCGTGGCCAAGGGTCTCAGA
TAATGCAAAAGACCTTGTCAGGGGAATGCTTAACCCAGATCCAAGGAGGCGTTTGACAGC
TCAGCAAGTGCTTGATCATCCCTGGTTGCAGAATATTAAGAAGGCTCCAAATGTCAATTT
GGGTGAAACAGTTAAGGCCAGACTTCAACAATTCTCTGTGATGAACAAGTTCAAGAAGCA
CGCACTTAGGGTCATAGCTGAGCATCTTTCGGTAGAAGAGGTGGCCGGCATAAAGGATAT
GTTTGAAAAGATGGACCTTAACAAAGATAGTATGATTAATTTTGATGAATTGAAGCTTGG
TCTAAATAAACTTGGCCACCAAATGCCTGATGCGGATGTCCAAATACTAATGGATGCTGC
TGACGCTGATGGAAATGGGTGCTTAGACTATGGAGAATTTGTTACTCTGTCTGTTCACCT
GAAAAAGATCGGCAATGACGAACATCTCCATAAGGCATTTGGATACTTTGATCGGAACAA
GAGTGGATATATTGAAATTGATGAGCTCCGGGAGTCATTAGCTGATGATCTGGGACCAAA
TCATGAAGAGGTTATTAATGCCATCATCCGCGATGTAGACACTGATAAGGATGGCAAGAT
AAGCTTTGAAGAGTTTGTGGCAATGATGAAGGCCGGAACCGACTGGAGGAAAGCCTCAAG
ACAATATTCGAGAGAACGTTTCACAAGCCTCAGCTTAAAGCTGCAGAAGGATGGATCGTT
GCAGATAACAAGTACCCAATAGTAGATGATAACGCGGTAGGCAAGTTGTGAATTCCAGAT
GAAAACCAACCTTGTGTAGCTTCCTGGTTTTTTGTTGACAAGTATTTCTTTTGTTCATCT
GGGTATTCTGTTGCGCTCTAATTTTCGCTTGGTATCCTGATGAAGCATTAGTTGATTGTT
GAAGATTTATTTTGTATGTAGACTGTGTGATCCAGACCATCACGAAAAGTACTACGCCTT
TGATGAAAGGTAGAGTGTACAAGAGAAAGAGGAGAAAGTTTGTGGATGTATGCATTTCCT
CTCTTCTGTTGACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g38120.1	551	protein\|CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g24240.1	539
Arabidopsis v10	AT5G12480.1	535	\| Symbols: CPK7 \| calmodulin-domain protein kinase 7 \| chr5:4047817-4050035 REVERSE LENGTH=535